Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000303.1 Kokia drynarioides strain JFW-HI SEQ_111062, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4011
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37


Found at i:324 original size:17 final size:17

Alignment explanation


    Indices: 304--337  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        294 TTTTACATGA

                    *        
        304 TTAAATAATATTTAAAT
          1 TTAAATAACATTTAAAT

                             
        321 TTAAATAACATTTAAAT
          1 TTAAATAACATTTAAAT

        338 AAATTTTTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44


Consensus pattern (17 bp):   
TTAAATAACATTTAAAT
Done.