Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003033.1 Kokia drynarioides strain JFW-HI SEQ_115555, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4243
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32


Found at i:995 original size:12 final size:12

Alignment explanation


    Indices: 978--1023  Score: 58
    Period size: 12  Copynumber: 3.8  Consensus size: 12

        968 TTAACTTAAT

                        
        978 CGAACATGTTCA
          1 CGAACATGTTCA

                     ** 
        990 CGAACAT-TAAA
          1 CGAACATGTTCA

                        
       1001 CGAACATGTTCA
          1 CGAACATGTTCA

                       
       1013 CGAACAATGTT
          1 CGAAC-ATGTT

       1024 AATGAATAAT


Statistics
Matches: 28,  Mismatches: 4, Indels: 3
        0.80            0.11        0.09

Matches are distributed among these distances:
  11    9  0.32
  12   14  0.50
  13    5  0.18

ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24


Consensus pattern (12 bp):   
CGAACATGTTCA

Found at i:1013 original size:23 final size:23

Alignment explanation


    Indices: 956--1018  Score: 83
    Period size: 23  Copynumber: 2.7  Consensus size: 23

        946 TAATGTTCAT

                        **        * 
        956 GAACATGTTCATTTAAC-TTAATC
          1 GAACATGTTCA-CGAACATTAAAC

                                   
        979 GAACATGTTCACGAACATTAAAC
          1 GAACATGTTCACGAACATTAAAC

                             
       1002 GAACATGTTCACGAACA
          1 GAACATGTTCACGAACA

       1019 ATGTTAATGA


Statistics
Matches: 36,  Mismatches: 3, Indels: 2
        0.88            0.07        0.05

Matches are distributed among these distances:
  22    3  0.08
  23   33  0.92

ACGTcount: A:0.40, C:0.21, G:0.13, T:0.27


Consensus pattern (23 bp):   
GAACATGTTCACGAACATTAAAC
Done.