Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003039.1 Kokia drynarioides strain JFW-HI SEQ_115563, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3960
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35


Found at i:1977 original size:21 final size:22

Alignment explanation


    Indices: 1951--1998  Score: 57
    Period size: 21  Copynumber: 2.3  Consensus size: 22

       1941 AGAACTGAAC

                                   
       1951 TTTTAAGATTTTT-T-TTTTATA
          1 TTTTAA-ATTTTTATCTTTTATA

                               *  
       1972 TTTT-AATTTTTATCTTTTTTA
          1 TTTTAAATTTTTATCTTTTATA

                  
       1993 TTTTAA
          1 TTTTAA

       1999 CTTTGACATT


Statistics
Matches: 23,  Mismatches: 1, Indels: 5
        0.79            0.03        0.17

Matches are distributed among these distances:
  19    6  0.26
  20    2  0.09
  21   14  0.61
  22    1  0.04

ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73


Consensus pattern (22 bp):   
TTTTAAATTTTTATCTTTTATA
Done.