Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01000304.1 Kokia drynarioides strain JFW-HI SEQ_111063, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17746
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Found at i:4506 original size:216 final size:215
Alignment explanation
Indices: 3987--6320 Score: 2395
Period size: 216 Copynumber: 11.0 Consensus size: 215
3977 CATACTGCAT
* * * *
3987 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAAAAATCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * *
4052 CAATAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAAAGAC-AACGTAATTAGACC-AA--
66 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC-TATTTAGACCAAATG
* * * *
4113 AT-GA----TCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGAATCGTCTTGAATAATTT
130 ATGGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTT
*
4173 AACGAACCAAAGTTA-AAATAG
195 AACGAACCGAAGTTATAAA-AG
* * ** * *
4194 AACTCATAAATGTTTGACAA-TTTTAGAAGTTCATCCAAGAACCAAGAGACAAACAATTCTCACG
1 AACTCGTAAAAGTTTGACAAGTTCCA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * *
4258 TAAATAAGTTTTTAATTGAAGGACCAAAACTTGTTTATAAAATGACAAACTATTTAGACCAAATG
65 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* ** * * *
4323 ATGCGATTTCTTGAGCATGGAATGTTCAAAAAATTGCTTGAAGGATTGGATCGTTTTGTATACTT
130 ATG-GATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTT
* * * *
4388 TAAGGAACTGAAGGTATAAAAT
194 TAACGAACCGAAGTTATAAAAG
* * * * *
4410 AACTCGTAAAAGTTTTACGAGTTCCAAAGTTCGTCCAATAACCAAGAGAGAAA-AAATCTCATGT
1 AACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * * *
4474 TAATAAGTTTTTAAATTCAATGACCTAAACTTGTTTACAAAAAGTCAACCTATTTAGACC-AA--
66 AAATAAGTTTTT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* *
4536 ATGG---T-T-GAGCATAGAATGTTCGGAAAATTGCTCGAAGGAATGGAT-GTCTTGAATACTTT
130 ATGGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTT
*
4595 AACAAACCGAAGTTATAAAAG
195 AACGAACCGAAGTTATAAAAG
* * * * *
4616 AACTCGTCAAAGTTTGACTAGTT-CAGAAGTTCATCCAAGAACTAAGAGAGAAAAAATTCTCACG
1 AACTCGTAAAAGTTTGACAAGTTCCA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * *
4680 TAAATAAGTTTTTAATTCAAGGACCAAAACATGTTTACAAAATGACAAACTATTTAGTCCAAATG
65 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * *
4745 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGATTAGATAGTCTTGAATACTT
130 ATG-GATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTT
* *
4810 TAACGAACCAAAGTTATGAAAG
194 TAACGAACCGAAGTTATAAAAG
* * *
4832 AACTCGTAAAAGTTTGACAAGTT-CAGAAGTTCGTCCATGAACCAAGAGAGAAAGAATTCTCATG
1 AACTCGTAAAAGTTTGACAAGTTCCA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * *
4896 TAAAGAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAAAGACAACCTATGTAGACC-AA--
65 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * *
4958 AT-GA----TCGAGCATAGAATGTCCAGAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTT
130 ATGGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTT
* *
5018 AACGAATCGAAGTTGTAAAAG
195 AACGAACCGAAGTTATAAAAG
** * * * *
5039 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAACCAAGAGACAAATAATTCTCACAT
1 AACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * *
5104 AAATAAGTTTTTAATTTAAAGATCAAAGCTCT-TTCACAAAATGACAAACTATTTAGACCAACTG
66 AAATAAGTTTTTAATTCAAAGACCAAAACT-TGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * *
5168 ATGCGATTTCTCGAGCATAGAAAGTTCAGAAAATTGCTCGAAGGATTGGATTGTCTTGAATACTT
130 ATG-GATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTT
*** *
5233 TCTGGAACCAAAGTTATAAAAG
194 TAACGAACCGAAGTTATAAAAG
* ** ** * * * *
5255 AACACGTAAAAGTTTTTCAAGGTT-GGACGTTCGTCCAAGATCCAAGAGGGAAACAATTCTCAAG
1 AACTCGTAAAAGTTTGACAA-GTTCCAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * **
5319 CAAATAATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGGAAAAAAAATTTAGACCAAAT
65 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAAT
* * * * * *
5384 GATGTCATTTCCCGAGCATTGAATGTTCGAAAAATGGCTCGAAGGATTGAATCGTCTTGAATACT
129 GATG-GATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACT
* * *
5449 GTAAAGAACCGAAGTTATAAAAA
193 TTAACGAACCGAAGTTATAAAAG
* * * *
5472 AACTCGTAAAAGTTTAACAAGTTCGAAAGTTTGTCCAATAACCAAGAGAGAAACAATTCTCACGT
1 AACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * * * *
5537 AAATAAGTTTTTAATTAAAAGACCAAGACATGATTACCAAATGACAAATTATTTTGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * ** * *
5602 TATGATTTCTAGAGCATGGAATTTTCGGAAAATTATTCGAACGATTGGATCATCTTGAATACTTT
131 T-GGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTT
*** *
5667 AACGAAAAAAAGTTATGAAAG
195 AACGAACCGAAGTTATAAAAG
* ** * * * * *
5688 AACTCATAAAAGTTTGACAAGTTCGGAAGTTCATCCACGAACTAAGAGAGAAACGATTCTCCCGT
1 AACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* *
5753 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATGTGGACCAAATGA
66 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * *
5818 TGTGATTTCTTGAGCATGGAATGTT-GGAAAATTGCTCAAAAGGATTGGATCATCTTGAATACAT
131 TG-GATTTCTCGAGCATGGAATGTTCGGAAAATTGCTC-GAAGGATTGGATCGTCTTGAATACTT
* * *
5882 T-ATGAAACAGATGTTATAAAAG
194 TAACG-AACCGAAGTTATAAAAG
* ** * * * * * * **
5904 AGCTTATAAAAGTTTGACAAGTTTCGAAGCTCGTCCAAGGACCAAAAG-GAAAAAAAAACTCACG
1 AACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACG
* * * * *
5968 TCAATAAGTTTTAAATTCAAAGACTAAAACTTGTTTACAAAAAGACAACCTATTTAGACC-AA--
65 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* *
6030 AT-GA----TCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
130 ATGGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTT
* *
6090 AACGAACTGAAGTTATAAAAC
195 AACGAACCGAAGTTATAAAAG
* * * ** *
6111 AACTCGTAAAAGTTTCACAAGTT-CAGAAGTTCATCCTAGAATGAAGAGAAAAAACAATTCTCAC
1 AACTCGTAAAAGTTTGACAAGTTCCA-AAGTTCGTCCAAGAACCAAGAG-AGAAACAATTCTCAC
* * * *
6175 GTAAATAAGTTTTTAATT-AAAGGACCAAAACTTATTTACAAAATGAAAAACTATATACACCAAA
64 GTAAATAAGTTTTTAATTCAAA-GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * *
6239 TTATGTGATTTCCCGAGCATGGAATGTAC-GAGAAATTGTTCGAAGGATTGGATCGTCTTGAATA
128 TGATG-GATTTCTCGAGCATGGAATGTTCGGA-AAATTGCTCGAAGGATTGGATCGTCTTGAATA
* *
6303 CTTTAAGGAACCAAAGTT
191 CTTTAACGAACCGAAGTT
6321 TGACAAGTTT
Statistics
Matches: 1753, Mismatches: 312, Indels: 114
0.80 0.14 0.05
Matches are distributed among these distances:
205 2 0.00
206 116 0.07
207 415 0.24
208 79 0.05
209 6 0.00
210 5 0.00
211 6 0.00
212 5 0.00
213 10 0.01
215 74 0.04
216 791 0.45
217 244 0.14
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (215 bp):
AACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
TGGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTA
ACGAACCGAAGTTATAAAAG
Found at i:6500 original size:195 final size:196
Alignment explanation
Indices: 6154--6515 Score: 460
Period size: 195 Copynumber: 1.9 Consensus size: 196
6144 TCCTAGAATG
* * *
6154 AAGAGAAAAAACAATTCTCACGTAAATAAGTTTTTAATTAAAGGACCAAAACTTATTTACAAAAT
1 AAGAGAAAAAACAATTCTCACGTAAAAAAGATTTTAATCAAAGGACCAAAACTTATTTACAAAAT
** * *
6219 GAAAAACTATATACACCAAATTATGTGATTTCCCGAGCATGGAATGTACGAGAAATTGTTCGAAG
66 GAAAAACTATATACACCAAACAATGTGATTTCCCGAGCATGAAATGTACGAGAAATTGATCGAAG
6284 GATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTTGACAAGTTTGGAAATTTGTCCAATAAC
131 GATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTTGACAAGTTTGGAAATTTGTCCAATAAC
6349 T
196 T
* * * * * *
6350 AAGAGAGAAAA-ATTTCTCACGTAAAAAAGATTTTAGTGCAAA-GTCCAAAACTTGTTTACTAAA
1 AAGAGAAAAAACAATTCTCACGTAAAAAAGATTTTAAT-CAAAGGACCAAAACTTATTTACAAAA
* * ** * * * **
6413 TGACAAACTATTTTGACTAAACAATGTGATTTCTCGAGCATTAAATGTTTG-GAAAATTGATCGA
65 TGAAAAACTATATACACCAAACAATGTGATTTCCCGAGCATGAAATGTACGAG-AAATTGATCGA
* * *
6477 ATGATTGGATCGTCTTGAATACTTTAATGAACCGAAGTT
129 AGGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTT
6516 ATGAAAGAAC
Statistics
Matches: 139, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
194 1 0.01
195 125 0.90
196 13 0.09
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (196 bp):
AAGAGAAAAAACAATTCTCACGTAAAAAAGATTTTAATCAAAGGACCAAAACTTATTTACAAAAT
GAAAAACTATATACACCAAACAATGTGATTTCCCGAGCATGAAATGTACGAGAAATTGATCGAAG
GATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTTGACAAGTTTGGAAATTTGTCCAATAAC
T
Found at i:6697 original size:216 final size:213
Alignment explanation
Indices: 6315--7357 Score: 1089
Period size: 216 Copynumber: 4.9 Consensus size: 213
6305 TTAAGGAACC
** * * * * *
6315 AAAGTTTGACAAGTTTGGAAATTTGTCCAATAACTAAGAGAGAAA-AATTTCTCACGTAAAAAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAA-TTCTCACGTAAATAAG
* * * * * *
6379 ATTTTAGTGCAAAGTCCAAAACTTGTTTACTAAATGACAAACTATTTTGACTAAACAATG-TGAT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGAC--CA-AATGATGAT
** * * * * *
6443 TTCTCGAGCATTAAATGTTTGGAAAATTGATCGAATGATTGGATCGTCTTGAATACTTTAATGAA
127 TTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAA
*
6508 CCGAAGTTATGAAAGAACTCGTA
191 CCGAAGTTATAAAAGAACTCGTA
** * * * *
6531 AAAGTTTGACAAGTTCAGAAGTTTTTCCAATAACCAAGAGAGAAACGATTCTAATGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
6596 TTTTAATTCAAAGACCAAAACATGATTACCAAATGACAAACTATTTTGACCAAATGGCATGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAAT-G-ATGATTT
* * * * *
6661 CCAGAGCATGGAATTTTCGAAAAATTACTTGAATGATTGGATCGTCTTGAATACTTTAACGAAAC
129 CC-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAACC
* *
6726 GAAGTTATGAAAGAACTCATA
193 GAAGTTATAAAAGAACTCGTA
** * * * *
6747 AAAGTTTGACAAGTTTGGAAGTTCGTCCACGGACCAAGAGAGAAACGATTCTCACCTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* ** *
6812 TTTTAATTCAAAGACCAAAACTTGTTTACAAATTGACAAACTACATGGACCAAATGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGAT--GA-TT
* * * * * ** **
6877 TCTGAGCATAGAATTTTCGAAAAATTTCTCGAAGGATTGGATCATCTTGAATAAATTATGGAA-C
128 TCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAACC
* * *
6941 AAATGTTATAAAAGAGCTCATA
193 GAA-GTTATAAAAGAACTCGTA
* * * * * * * *
6963 AATGTTTGAAAAGTTTAGAAGTTCGTCCAAGAACCAAAAGAGAAAAAAATCTCACATTAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
7028 TTTTAATTCAAATACCAAAACTTGTTTACAAAAAGA-AAACCTATTTAGACC-AA--ATGA--T-
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA-CTATTTTGACCAAATGATGATTTC
* * * * *
7086 CGAACATGGGATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAACGAACTGA
130 CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAACCGA
*
7151 AGTTGTAAAAGAACTCGTA
195 AGTTATAAAAGAACTCGTA
* * * * *
7170 AAAGTTTCACAAGTTCAGAAGTTCATCCTAGAACGAAGAGAGAAATAATTCTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
7235 TTTTAATTCAAGGACCAAAACTTGTTTACAAAATGACTAACTATATTGACCAAATTATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGAT--GATTT
* *
7300 CTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATACTTTA
129 C-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTA
7358 TGGAACCAAA
Statistics
Matches: 689, Mismatches: 117, Indels: 42
0.81 0.14 0.05
Matches are distributed among these distances:
207 158 0.23
208 7 0.01
210 2 0.00
211 2 0.00
212 2 0.00
213 5 0.01
214 5 0.01
215 10 0.01
216 493 0.72
217 5 0.01
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.29
Consensus pattern (213 bp):
AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGATTTCC
GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAACCGAA
GTTATAAAAGAACTCGTA
Found at i:7510 original size:193 final size:195
Alignment explanation
Indices: 7178--7767 Score: 600
Period size: 193 Copynumber: 2.9 Consensus size: 195
7168 TAAAAGTTTC
* * * *
7178 ACAAGTTCAGAAGTTCATCCTAGAACGAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGATTTTAAGT
* * * *
7243 CAAGGACCAAAACTTGTTTACAAAATGACTAACTATATTGACCAAATTATGCGATTTCTCGAGCA
66 CAAAGACAAAAACTTGTTTACAAAATGACAAACTATATTGACCAAATTATACGATTTCTCGAGCA
* *
7308 TGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATACTTTATGGAACCAAACTTTG
131 TGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACCAAACTTTG
* *
7373 ACAAGTTCGGAAGTTCATCCAATAACCAAGAGAGAAATAATTCTCACGTAAA-AAGATTTT-AGT
1 ACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGATTTTAAGT
* *
7436 GAAAGACAAAAACTTGTTTACAAAATGACAAACTAT-TTAGA-CTAATTGATACGATTTCTCGAG
66 CAAAGACAAAAACTTGTTTACAAAATGACAAACTATATT-GACCAAATT-ATACGATTTCTCGAG
* *
7499 CGTGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCATCTTGTATACTTTAAGGAACTTCAGGT
129 CATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAAC--C----
7564 ATAAAAGAACTCATAAAAGTTTG
188 -----A-AA--C-T-----TT-G
* * * **
7587 AC-AGATTCAAAAGTTCGTCCAATAACCAAGAGAGAAACGATTCTCACGTAAATAAG-TTTTAAA
1 ACAAG-TTCAGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGATTTT-AA
* * ** * * * *
7650 TTCAAAGACAAAAAGTTGTTTACAAAATTCCAAACTATTTTGACCAAATGATATGATTTCCCGAG
64 GTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATATTGACCAAATTATACGATTTCTCGAG
* * * *
7715 CATGGAATGATC-AGAAAATTACTCGAATGATTGGATCGTCTTGAATACTTTAA
129 CATGGAATGTTCGA-AAAATTGCTCGAAGGATTGGATCATCTTGAATACTTTAA
7768 ATAACCGAAG
Statistics
Matches: 329, Mismatches: 36, Indels: 39
0.81 0.09 0.10
Matches are distributed among these distances:
192 7 0.02
193 104 0.32
194 7 0.02
195 49 0.15
204 1 0.00
205 2 0.01
207 1 0.00
208 1 0.00
213 4 0.01
214 49 0.15
215 4 0.01
216 94 0.29
217 6 0.02
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (195 bp):
ACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGATTTTAAGT
CAAAGACAAAAACTTGTTTACAAAATGACAAACTATATTGACCAAATTATACGATTTCTCGAGCA
TGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACCAAACTTTG
Found at i:7749 original size:216 final size:215
Alignment explanation
Indices: 7369--13308 Score: 6160
Period size: 216 Copynumber: 27.6 Consensus size: 215
7359 GGAACCAAAC
* * * *
7369 TTTGACAAGTTCGGAAGTTCATCCAATAACCAAGAGAGAAATAATTCTCACGTAAA-AAGATTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * ** *
7433 -AGTGAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACTAATTGATACGATTTCTCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * **
7497 AGCGTGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCATCTTGTATACTTTAAGGAACTTCAG
131 AGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAAG
* *
7562 GTATAAAAGAACTCATAAAAG
195 TTATAAAAGAACTCGTAAAAG
** * *
7583 TTTGAC-AGATTCAAAAGTTCGTCCAATAACCAAGAGAGAAACGATTCTCACGTAAATAAGTTTT
1 TTTGACAAG-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * ** * *
7647 AAATTCAAAGACAAAAAGTTGTTTACAAAATTCCAAACTATTTTGACCAAATGATATGATTTCCC
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC
* * * ** **
7712 GAGCATGGAATGATCAGAAAATTACTCGAATGATTGGATCGTCTTGAATACTTTAAATAACCGAA
130 GAGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAA
* *
7777 GTTATGAAAGAACTCGTAAAGG
194 GTTATAAAAGAACTCGTAAAAG
* * * * *
7799 TTTGACAAGATCGGAAGTTCGTCCACA-TACTAAGAGAGAAACAATTCTAACGTAATTAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
7863 TAATTCAAAGACCAAAACTT-TTTCACAAAATGGCAAACTATTTTGACCAAATGATGCT-ATTTA
65 TAATTCAAAGACCAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATG-TGATTTC
* * * * * * *
7926 CCAAGCATGGAATGTTCAAAAAATTGCTTGAATGATTGTATCGTCTTGAATACTTTAACGAACTG
128 CCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTA
*
7991 AAGTTATGAAAGAACTCGTAAAAG
192 AAGTTATAAAAGAACTCGTAAAAG
* * * *
8015 TTTGCCAAGTTCGGAAGGTCGACCACA-AACCAAGAGAGAAACAATTCTCAAC-TAAAAAAGTTT
1 TTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTC-ACGTAAATAAGTTT
* * * * *
8078 TTAATTCAATGACCAAAACTTGTTTACAAAATGGCAAACTATTTAGACAAAATGATGCGATTTCT
64 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCC
* * * * * * *
8143 TGAGCATTGTATGCTCGAAAAATT-TTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
129 CGAGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAA
* *
8207 AGCTATAAAAGAACTCGTAGAAG
193 AGTTATAAAAGAACTCGTAAAAG
** * * * * *
8230 TTTGACAAGTTCAAAAGTTCGTCTAAGAACCAAGAGACAAATAATTCTTATGTAAATATA-TTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTT
* * * * *
8294 TAATTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAACTGATGCGATTTTCT
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC
* * * * *
8359 AAGCATGGAATGTTCG-TAA-------AAGGATTGGATCATCTTGAAAACTTTAAGGAACAAAAG
130 GAGCATGGAATGTTCGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAAG
8416 TTATAAAAGAACTCGTAAAAG
195 TTATAAAAGAACTCGTAAAAG
* * * * *
8437 TTTGAGAAGGTCGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGT-AATAAATTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * ** *
8501 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACTAATTGATACGATTTCTCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * **
8566 AGCGTGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTGGTATACTTTAAGGAACTTCAG
131 AGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAAG
* *
8631 GTATAAAAGAACTCATAAAAG
195 TTATAAAAGAACTCGTAAAAG
** * *
8652 TTTGAC-AGATTCAAAAGTTCGTCCAATAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTT
1 TTTGACAAG-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * **
8716 AAATTCAAAGACAAAAAGTTGTTTACAAAAT-ACCAAACTATTTTGACCAAATGATATGATTTAT
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGA-CAAACTATTTAGACCAAATGATGTGATTTCC
* * * * * **
8780 CGAGCATGGAATGATCAGAAAATTACTCGAATGATTGGATCGTCTTTAATTCTTTAAATAA-TCA
129 CGAGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACT-A
* *
8844 AAGTTATGAAAGAACTCGTAAAGG
192 AAGTTATAAAAGAACTCGTAAAAG
* * * * * *
8868 TTTCACAAGATCGAAAGTTTGTCCACA-TACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
8932 TAATTCAAATACCAAAACTT-TTTCACAAAATGACAAACTATTTTGACCAAATGATGCT-ATTTA
65 TAATTCAAAGACCAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATG-TGATTTC
* * * * *
8995 CCAAGCATGGAATGTTCAAAAAATTGCTCGAATGATTGGATCGTCTTGAATACTTTAACGAATTA
128 CCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTA
*
9060 AAGTTATGAAAGAACTCGTAAAAG
192 AAGTTATAAAAGAACTCGTAAAAG
* * * * *
9084 TTT-ACCAAGTTTGGAAGGTCGACCACGAACCAAGAGAGAAACAATTCTCAAC-TAAAAAAGTTT
1 TTTGA-CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC-ACGTAAATAAGTTT
* * * * * * *
9147 TTAATTCAATGAGCAAAACTTGTTTACAAAATGGCAAACTATTTAGACAAAATGATGCGACTTCT
64 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCC
* * * * * * *
9212 TGAGCATTGAATGCTCGTAAAATT-TTCGAAGGAATGGATCGTCATGAATACTTTAAGGAACCAA
129 CGAGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAA
9276 AGTTATAAAAGAACTCGTAAAAG
193 AGTTATAAAAGAACTCGTAAAAG
* ** * * * * * *
9299 TTTGACAACTTTAGAAGTTCGTCTAAGAACCGAGAGACAAATAATTCTCATGTAAATATGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * **
9364 AATTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAACTGATGCGATTTTCAT
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * ** * * **
9429 AGCATGGAATGTTCAAAAACTTGCTCGAAGGATTGAATCATCTAAAATACATTAAGGAGCCGAAG
131 AGCATGGAATGTTCGAAAA-TTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAAG
*
9494 TTATAAAAGAAGTCGTAAAAG
195 TTATAAAAGAACTCGTAAAAG
* * * * * *
9515 TTTGACAAGGTCGGAAGTTCATCAAAGAACCAAGAGAGAAACAATTCTAACATAAATAATTTTTC
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT-
* * *** * * *
9580 TAATTTAATGATGGAAACCTGTTTA-AAACTGACATACTATTT-GTACCAAATGATGTGATTTCC
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG-ACCAAATGATGTGATTTCC
* * * * *
9643 CGAGCATGGAATGTTCAGAAAATGGCTCGAAGGATTGCATCGTCTTGCATATTTTAAGGAACTGA
129 CGAGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAA
9708 AGTTATAAAAGAACTCGTAAAAG
193 AGTTATAAAAGAACTCGTAAAAG
* * * *
9731 TTTGACAAGTTCAG-AGCTTCGTCAAATAACCAAGAAAGAAACAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * **
9795 TAATTCAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGGCCAAATAATGCAATTTCCC
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC
* * * * * * * * * ** *
9860 GAGCATGGCATGCTCGAAAAATTTCTCAAATGATTGGATCATCTTGACTACTGTAACGAACCGAT
130 GAGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAA
*
9925 GTTATGAAAGAACTCGTAAAAG
194 GTTATAAAAGAACTCGTAAAAG
* *
9947 TTTGAAAAAG-TCGGAAGTTCGTCCACA-AACCAAGAGAGAAACAATTCTCACGTAGATAAGTTT
1 TTTG-ACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*** * * * * *
10010 TTAATTCAAAGATGTAAACTTGCTTACAAAATGACAGACTATTTTGACCAAATGATGTTATTTCT
64 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCC
* * * * * ** *
10075 CGAGCACGGAATGCTCGAAAAATTGTTCGAATGATTGGATCGTCTTGAATATTTTAACAAACTGA
129 CGAGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAA
* *
10140 AGTTATGAAA-CACTCGTAAAAG
193 AGTTATAAAAGAACTCGTAAAAG
* * * * * *
10162 TTTGACAAGTTCAGAAGTTCATCCACGAACCAAGAGAGAAACAATTCTCAAGTAAATATGTTTTC
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * ****
10227 AATTCAAAGACCAAAACTAGTTTACAAAATGGCAAACTATTCAGACAAAATGATGTGATTTATTA
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * ** *
10292 AGCATGGAATGTTCACAAAATTGCTCGAAGGAATGGATCGACTTGAATACTTTAAGGAACCGATG
131 AGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAAG
10357 TTATAAAAGAACTCGTAAAAG
195 TTATAAAAGAACTCGTAAAAG
* * * * * *
10378 ATTGATAAGGTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAATTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10443 AATTCAAAGACCAAAACTTGTTTA-AAGATGACAAACTATTTATACCAAATGATGAGATTTCTCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * * * *
10507 AGCATTGAATGTTCAGAAAATTGCTAGAAAGATTGCATCATCTTGAATACTTTAAGGAA-TCGAA
131 AGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACT-AAA
*
10571 GTTATAAAAGAACTCGTAAATG
194 GTTATAAAAGAACTCGTAAAAG
** * *
10593 TTTGACAAGTTCGG-AGCTTCGTAGAATAACCAAGAGAGAAACAATTCTC-CTGTAAATAAATTT
1 TTTGACAAGTTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC-GTAAATAAGTTT
* * * *
10656 TTAATTCAAAGACCAAAACTTTTTTACAAAATGGA-AAACTATTTTGAGCAAATGATGCGATTTC
64 TTAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGTGATTTC
* * * ** * * **
10720 CCGAGCATGGATTGTTCGGAAAATTGCTCAAATGATTTCATCGTCTTGGATACATTAACAAACTA
128 CCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTA
* *
10785 AAGTTATGAAAGAACTAGTAAAAG
192 AAGTTATAAAAGAACTCGTAAAAG
* * * *
10809 TTTGACATGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * **
10874 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAGCAAATGATGCGATTTCTTG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * * * * * * *
10939 AGCATAGACTGTTCGAAAAATTGCTCAAAGTATTGGATCATCTTGAAAACTTTATGGAA-TCGAT
131 AGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACT-AAA
*
11003 GTTATAAAAGAATTCGTAAAAG
194 GTTATAAAAGAACTCGTAAAAG
* * * *
11025 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAAAAAATCTCACGTCAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
11090 AATTTAAAGATCAAAACTTGTTTGCAAAAAGACAACCTATTTAGA-C-AA--A--TGA--T--CG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * * * * * *
11145 AGCACGAAATGTTCGGAAAATTTCTCGAAGGAATGGATCGTTTTAAATGCTTTAATGAACTAAAG
131 AGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAAG
11210 TTATAAAAGAACTCGTAAAAG
195 TTATAAAAGAACTCGTAAAAG
* ** * *
11231 TTTGATAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAATTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * *
11296 AATTAAAAGATTAAAACTTGTTTACAAAATGAAAAACTATTTAGAGCAAATGAT-TCGATTTCCC
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGT-GATTTCCC
* * * *
11360 AAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCGTCTTGTATACTTTAAGGTACTAAA
130 GAGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAA
11425 GTTATAAAAGAACTCGTAAAAG
194 GTTATAAAAGAACTCGTAAAAG
* ** * * * *
11447 TTTGACAAATTAAGAAATTTGTTCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * ** *
11512 AATTCAAAGACCAAAACTTGTTTAGAAAATTACAAACTATTTTGACCAAATGATGCAATTTCTCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * ** **
11577 AGCATGGAATGTTTGGAAAATTGCTCGAATGATTGGTTCGTCTTGAATACTTTAACAAACCGAAG
131 AGCATGGAATG-TTCGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAAG
* *
11642 TTATGAAAGAACTCATAAAAG
195 TTATAAAAGAACTCGTAAAAG
* * * * * *
11663 TTTGACAAGGTCGAAAGTTCATCCACA-AACCAAGAGAGAAACAATTCTAATGTAAACAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* *
11727 TAATTCAAAGACCAAAACTTGTTTACAAAATGGCAGACTATTTTA-ACCAAATGATGCT-ATTTC
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATG-TGATTTC
* * ** * * * *
11790 CTGAGCATGGAATGTTCAAAAAATTGCTCGAATAATTGGATCATCTTGAATAATTTAACGAACTG
128 CCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTA
*
11855 AAGTTATGAAAGAACTCGTAAAAG
192 AAGTTATAAAAGAACTCGTAAAAG
* * * *
11879 TTTGACAAGTTCGAAAGTTCATCCACGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * ** ****
11944 AATTCAAAGACCAAAACTAGTTTACAAAATGGCAAACTATTCAGACAAAATGATACGATTTATTA
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * * *
12009 AGCATGGAATGTTTGAAAAATTGCTCGATGGAATGGATTGTCTTGAATACTTTAAGGAACCT-AC
131 AGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA-CTAAA
*
12073 GTTATAAAAGAACTTGTAAAAG
194 GTTATAAAAGAACTCGTAAAAG
* * * * * *
12095 TTTGACAAGTTTGGAAGTTCGTCTAAGAACCGAGAGACAAATAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
12160 AATTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC-AATAGATGTGATTTTCC
66 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAT-GATGTGATTTCCC
** * * ** *
12224 GAGTGTGGAATGTTCGAAAAATTGCTCAAAGGATTGGATCATCTTGAATACTTTAAAAAACCAAA
130 GAGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAA
*
12289 GTTATAAAAGAACTTGTAAAAG
194 GTTATAAAAGAACTCGTAAAAG
* * * * * *
12311 TTTGACAAGGTCGAAAGTTTGTCCAAGAACCATGAGAGAAACAATTCTCATGTAAATAATTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
12376 AAATT-AAAAACCAAAACTTGTTTA-AAAATGACAAACTATTTATACCAAATAATGCGATATCCC
66 -AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC
* * * * *
12439 GAGCATGGAACGTTCAAAAAATTGCTCGAAGGATTGTATCATCTTGAATACTTTAAGGAACCAAA
130 GAGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAA
*
12504 GTTATAAAAGAACTAGTAAAAG
194 GTTATAAAAGAACTCGTAAAAG
* * *
12526 TTTGACAAGTTCAG-AGCTTCGTCCAATAACCAAGAGAGAAACAATTCGCACGTAAATAAGTTTT
1 TTTGACAAGTTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** * * * *
12590 TAACTCAAAGACCAAATGTTGTTTACATAATGACAAACTATTTTGACCAAATGACGTGACTTCCC
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC
* * * * * * *
12655 GAGAATGGAATGTTTGAAAAATTGCTCGAATGATTGGATCGTCTTGAATAATTTAACGAACCAAT
130 GAGCATGGAATGTTCG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAA
*
12720 GTTATGAAAGAACTCGTAAAAG
194 GTTATAAAAGAACTCGTAAAAG
* * * * * * * *
12742 TTTGAGAAGATCGAAAGTTTGTCGACA-AACCAAGAGAGAAACAATTGTCACGTAAAAAAGTGTT
1 TTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
12806 TAACTCAAAGACCAAAACTTGCTTACAAAATGGCAAACTATTTTGACCAAATGATGCT-ATTTCT
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-TGATTTCC
* * * * ** *
12870 CGAGCATGGAATGTTTGGAAAATTGCTCAAAAGATTGGATCATCTTGAATACTTT-AGTGATTTG
129 CGAGCATGGAATG-TTCGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAG-GAACTA
*
12934 AAGTTATGAAAGAACTCGTAAAAG
192 AAGTTATAAAAGAACTCGTAAAAG
* * * * * *
12958 TTTGACAAGTTC-AAATGTTTGTCCACGAACCAAGAGATAAACAATACTCAAGTAAATAAGTTTT
1 TTTGACAAGTTCGGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** *
13022 TAATTTAAAGACCAAAACTTGTTTACAAAATGGA-AAACTATTTAGACCAAATGATGCAATTTCT
65 TAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGTGATTTCC
** * * * * * * * **
13086 TAAGCATGGATTGTTCGGCAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTACGAAACCGA
129 CGAGCATGGAATGTTC-GAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAA
* * * *
13151 CGTGATAAGAGAACTCGTAATAG
193 AGTTATAAAAGAACTCGTAAAAG
** * * *
13174 TTTGACAAGTTTAGAAGTTCGTCTAAGAACCCAA-AGACAAATAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
13238 TAATTCAAGGACAAAAACTTCTTTACAAAATGACAAACTATTTAGACCAATTAATGTCATTTCCC
65 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC
13303 GAGCAT
130 GAGCAT
13309 TGAAGGAACC
Statistics
Matches: 4780, Mismatches: 828, Indels: 234
0.82 0.14 0.04
Matches are distributed among these distances:
205 1 0.00
206 242 0.05
207 98 0.02
208 5 0.00
210 3 0.00
211 1 0.00
212 3 0.00
213 4 0.00
214 72 0.02
215 1022 0.21
216 3242 0.68
217 87 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (215 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
AGCATGGAATGTTCGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACTAAAGT
TATAAAAGAACTCGTAAAAG
Found at i:8969 original size:20 final size:21
Alignment explanation
Indices: 8946--8985 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8936 TCAAATACCA
8946 AAACT-TTTTCACAAAATGAC
1 AAACTATTTTCACAAAATGAC
* *
8966 AAACTATTTTGACCAAATGA
1 AAACTATTTTCACAAAATGA
8986 TGCTATTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.30
Consensus pattern (21 bp):
AAACTATTTTCACAAAATGAC
Found at i:9265 original size:647 final size:647
Alignment explanation
Indices: 3987--13287 Score: 9203
Period size: 647 Copynumber: 14.5 Consensus size: 647
3977 CATACTGCAT
* * * * *
3987 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAAAAATCTC-ACG
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
* * * *
4051 TCAATAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAAAGAC-AACGTAATTAGACC-AA-
66 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC-TATTTAGACCAAAT
* * * * *
4113 -AT--GA----TCGAGCATGGAATGTTC-AGAAAATTGCTCGAAGGAATGAATCGTCTTGAATAA
130 GATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGTTCGAAGGATTGGATCATCTTGAATAC
* * * * * * *
4170 TTTAACGAACCAAAGTTA-AAATAGAACTCATAAATGTTTGACAATTTTAGAAGTTCATCCAAGA
194 TTTAAGGAACTAAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
* * * *
4234 ACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTGAAGGACCAAAACTTGTTTATAAA
258 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * *
4299 ATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCAAAAAATTGCTTGA
323 ATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGA
* * * ** * * * *
4364 AGGATTGGATCGTTTTGTATACTTTAAGGAACTGAAGGTATAAAATAACTCGTAAAAGTTTTACG
388 ATGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * * *
4429 AGTTCCAAAGTTCGTCCAATAACCAAGAGAGAAA-AAATCTCATGTTAATAAGTTTTTAAATTCA
453 AGATCGAAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-AATTCA
* * * * * * *
4493 ATGACCTAAACTTGTTTACAAAAAGTCAACCTATTTAGACCAAATG--G----TT--GAGCATAG
516 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCTATTTCCGAGCATGG
* **
4550 AATGTTCGGAAAATTGCTCGAAGGAATGGAT-GTCTTGAATACTTTAACAAACCGAAGTTATAAA
581 AATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
4614 AG
646 AG
* * * * * * *
4616 AACTCGTCAAAGTTTGACTAGTTCAGAAGTTCATCCAAGAACTAAGAGAGAAAAAATTCTC-ACG
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
* * *
4680 TAAATAAGTTTTTAATTCAAGGACCAAAACATGTTTACAAAATGACAAACTATTTAGTCCAAATG
66 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * *
4745 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGATTAGAT-AGTCTTGAATACT
131 ATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCA-TCTTGAATACT
* * * *
4809 TTAACGAACCAAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCATGAAC
195 TTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAAC
* * * * *
4874 CAAGAGAGAAAGAATTCTCATGTAAAGAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAAA
260 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * *
4939 GACAACCTATGTAGACC-AA--AT--GA----TCGAGCATAGAATG-TCCAGAAAATTGCTCGAA
325 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
* * * * * * *
4994 GGAATGGATTGTCTTGAATACTTTAACGAATCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAA
389 TGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * * * *
5059 GTTCGGAAGTTCGTCTAAGAACCAAGAGACAAATAATTCTCACATAAATAAGTTTTTAATTTAAA
454 GATCGAAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * * * *
5124 GATCAAAGCTCT-TTCACAAAATGACAAACTATTTAGACCAACTGATGCGATTTCTCGAGCATAG
518 GACCAAAACT-TGTTTACAAAATGACAAACTATTTTGACCAAATGATGCTATTTC-CGAGCATGG
* * * ** *
5188 AAAGTTCAGAAAATTGCTCGAAGGATTGGATTGTCTTGAATACTTTCTGGAACCAAAGTTATAAA
581 AATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
5253 AG
646 AG
* ** * * * *
5255 AACACGTAAAAGTTTTTCAAGGTTGGACGTTCGTCCAAGATCCAAGAGGGAAACAATTCTCAA-G
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
* * * **
5319 CAAATAATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGGAAAAAAAATTTAGACCAAAT
66 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAAT
* * * * * *
5384 GATGTC-ATTTCCCGAGCATTGAATGTTCGAAAAATGGCTCGAAGGATTGAATCGTCTTGAATAC
130 GATG-CGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATAC
* * ** * * * *
5448 TGTAAAGAACCGAAGTTATAAAAAAACTCGTAAAAGTTTAACAAGTTC-GAAAGTTTGTCCAATA
194 TTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGA
* * * * *
5512 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAGACATGATTACCAA
258 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * ** * * * **
5577 ATGACAAATTATTTTGACCAAATGATATGATTTCTAGAGCATGGAATTTTCGGAAAATTATTCGA
323 ATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGA
* * * ** * *
5642 ACGATTGGATCATCTTGAATACTTTAACGAAAAAAAGTTATGAAAGAACTCATAAAAGTTTGACA
388 ATGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * * * * *
5707 AGTTCGGAAGTTCATCCACGAACTAAGAGAGAAACGATTCTCCCGTAAATAAGTTTTTAATTCAA
453 AGATCGAAAGTTCGTCCA-AAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * *
5772 AGACCAAAACTTGTTTACAAAATGACAAACTATGTGGACCAAATGATG-TGATTTCTTGAGCATG
517 AGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCT-ATTTC-CGAGCATG
* * * * * * *
5836 GAATGTT-GGAAAATTGCTCAAAAGGATTGGATCATCTTGAATACATTATGAAACAGATGTTATA
580 GAATGTTCGGAAAATTGCTC-GAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
5900 AAAG
644 AAAG
* ** * * * * * **
5904 AGCTTATAAAAGTTTGACAAGTTTC-GAAGCTCGTCCAAGGACCAAAAG-GAAAAAAAAACTC-A
1 AACTCGTAAAAGTTTGACAAG-GTCGGAAGTTCGTCCAAGAACCAAGAGAG-AAACAATTCTCAA
* * * * *
5966 CGTCAATAAGTTTTAAATTCAAAGACTAAAACTTGTTTACAAAAAGACAACCTATTTAGACC-AA
64 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * *
6030 --AT--GA----TCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
129 TGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATAC
* * * * * *
6087 TTTAACGAACTGAAGTTATAAAACAACTCGTAAAAGTTTCACAAGTTCAGAAGTTCATCCTAGAA
194 TTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA
** * *
6152 TGAAGAGAAAAAACAATTCTCACGTAAATAAGTTTTTAATT-AAAGGACCAAAACTTATTTACAA
259 CCAAGAG-AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAACTTGTTTACAA
* * * * * * * * *
6216 AATGAAAAACTATATACACCAAATTATGTGATTTCCCGAGCATGGAATGTACGAGAAATTGTTCG
322 AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCG
*
6281 AAGGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTT-T----G-A--C----AAGTTT---
387 AATGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * * * *
6331 --G---GAAA-TTTGTCCAATAACTAAGAGAGAAA-AATTTCTCACGTAAAAAAGATTTTAGTGC
452 AAGATCGAAAGTTCGTCCAA-AACCAAGAGAGAAACAA-TTCTCACGTAAATAAGTTTTTAATTC
* * * **
6389 AAAGTCCAAAACTTGTTTACTAAATGACAAACTATTTTGACTAAACAATG-TGATTTCTCGAGCA
515 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCT-ATTTC-CGAGCA
** * * * *
6453 TTAAATGTTTGGAAAATTGATCGAATGATTGGATCGTCTTGAATACTTTAATGAACCGAAGTTAT
578 TGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
*
6518 GAAAG
643 AAAAG
* * ** * * *
6523 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTTTTCCAATAACCAAGAGAGAAACGATTCT-AATG
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
* * * *
6587 TAAATAAGTTTTTAATTCAAAGACCAAAACATGATTACCAAATGACAAACTATTTTGACCAAATG
66 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * *
6652 --GCATGATTTC-CAGAGCATGGAATTTTCGAAAAATTACTT-GAATGATTGGATCGTCTTGAAT
131 ATGC--GATTTCTC-GAGCATGGAATGTTCGAAAAATT-GTTCGAAGGATTGGATCATCTTGAAT
* * * * ** *
6713 ACTTTAACGAAAC-GAAGTTATGAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAC
192 ACTTTAA-GGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
* * *
6777 GGACCAAGAGAGAAACGATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
256 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* ** * * * *
6842 AATTGACAAACTACATGGACCAAATGATGCGATTT-TCTGAGCATAGAATTTTCGAAAAATTTCT
321 AAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAATTGCT
* * ** * * * *
6906 CGAAGGATTGGATCATCTTGAATAAATTATGGAA-CAAATGTTATAAAAGAGCTCATAAATGTTT
385 CGAATGATTGGATCGTCTTGAATACTTTAAGGAACCAAA-GTTATAAAAGAACTCGTAAAAGTTT
* ** * * * * *
6970 GAAAAG-TTTAGAAGTTCGTCCAAGAACCAAAAGAGAAAAAAATCTCACATTAATAAGTTTTTAA
449 GACAAGATCGA-AAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * *
7034 TTCAAATACCAAAACTTGTTTACAAAAAGA-AAACCTATTTAGACC-AA--ATG--A--T-CGAA
512 TTCAAAGACCAAAACTTGTTTACAAAATGACAAA-CTATTTTGACCAAATGATGCTATTTCCGAG
* * * * * *
7090 CATGGGATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAACGAACTGAAGTT
576 CATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
*
7155 GTAAAAG
641 ATAAAAG
* * * * * * *
7162 AACTCGTAAAAGTTTCACAAGTTCAGAAGTTCATCCTAGAACGAAGAGAGAAATAATTCTC-ACG
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
* *
7226 TAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAATGACTAACTATATT-GACCAAAT
66 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT-TTAGACCAAAT
*
7290 TATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATACT
130 GATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATACT
* * * *
7355 TT-----A-T---G--------GAAC-C---AAACTTTGACAAGTTCGGAAGTTCATCCAATAAC
195 TTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAAC
* * * * *
7399 CAAGAGAGAAATAATTCTCACGTAAA-AAGATTTT-AGTGAAAGACAAAAACTTGTTTACAAAAT
260 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * *
7462 GACAAACTATTTAGACTAATTGATACGATTTCTCGAGCGTGGAATGTTCGAAAAATTGCTCGAAG
325 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAT
* * *** * *
7527 GATTGGATCATCTTGTATACTTTAAGGAACTTCAGGTATAAAAGAACTCATAAAAGTTTGAC-AG
390 GATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
7591 ATTCAAAAGTTCGTCCAATAACCAAGAGAGAAACGATTCTCACGTAAATAAGTTTTAAATTCAAA
455 A-TCGAAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * ** *
7656 GACAAAAAGTTGTTTACAAAATTCCAAACTATTTTGACCAAATGAT-ATGATTTCCCGAGCATGG
518 GACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCT-ATTT-CCGAGCATGG
* * * * ** *
7720 AATGATCAGAAAATTACTCGAATGATTGGATCGTCTTGAATACTTTAAATAACCGAAGTTATGAA
581 AATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
7785 AG
646 AG
* * * *
7787 AACTCGTAAAGGTTTGACAAGATCGGAAGTTCGTCCACA-TACTAAGAGAGAAACAATTCT-AAC
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCAAC
* * *
7850 GTAATTAAGTTTTTAATTCAAAGACCAAAACTT-TTTCACAAAATGGCAAACTATTTTGACCAAA
65 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAA
* * * * * *
7914 TGATGCTATTTAC-CAAGCATGGAATGTTCAAAAAATTGCTT-GAATGATTGTATCGTCTTGAAT
129 TGATGCGATTT-CTCGAGCATGGAATGTTCGAAAAATTG-TTCGAAGGATTGGATCATCTTGAAT
* * * * * * *
7977 ACTTTAACGAACTGAAGTTATGAAAGAACTCGTAAAAGTTTGCCAAGTTCGGAAGGTCGACCACA
192 ACTTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCA-A
* *
8042 -AACCAAGAGAGAAACAATTCTCAAC-TAAAAAAGTTTTTAATTCAATGACCAAAACTTGTTTAC
256 GAACCAAGAGAGAAACAATTCTC-ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * * * * * *
8105 AAAATGGCAAACTATTTAGACAAAATGATGCGATTTCTTGAGCATTGTATGCTCGAAAAATT-TT
320 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCT
* * * *
8169 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTCGTAGAAGTTTG
385 CGAATGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * * * *
8234 ACAAGTTCAAAAGTTCGTCTAAGAACCAAGAGACAAATAATTCTTATGTAAATATA-TTTTTAAT
450 ACAAGATCGAAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAAT
* * * * **
8298 TCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAACTGATGCGATTTTCTAAGC
513 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCTA-TTTCCGAGC
* * * **
8363 ATGGAATGTTC-G-TAA-------AAGGATTGGATCATCTTGAAAACTTTAAGGAACAAAAGTTA
577 ATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
8419 TAAAAG
642 TAAAAG
* * *
8425 AACTCGTAAAAGTTTGAGAAGGTCGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTC-ACG
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
* * *
8489 T-AATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACTAATTG
66 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * *
8553 ATACGATTTCTCGAGCGTGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTGGTATACTT
131 ATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATACTT
** * * * *
8618 TAAGGAACTTCAGGTATAAAAGAACTCATAAAAGTTTGAC-AGATTCAAAAGTTCGTCCAATAAC
196 TAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCAGAAGTTCGTCCAAGAAC
* * * *
8682 CAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTAAATTCAAAGACAAAAAGTTGTTTACAAAAT
260 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* ** * * *
8747 -ACCAAACTATTTTGACCAAATGATATGATTTATCGAGCATGGAATGATC-AGAAAATTACTCGA
325 GA-CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGA
* * ** * * * *
8810 ATGATTGGATCGTCTTTAATTCTTTAAATAATCAAAGTTATGAAAGAACTCGTAAAGGTTTCACA
388 ATGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * *
8875 AGATCGAAAGTTTGTCCACATACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTAATTCAA
453 AGATCGAAAGTTCGTCCA-AAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* *
8940 ATACCAAAACTT-TTTCACAAAATGACAAACTATTTTGACCAAATGATGCTATTTACCAAGCATG
517 AGACCAAAACTTGTTT-ACAAAATGACAAACTATTTTGACCAAATGATGCTATTT-CCGAGCATG
** * * *** *
9004 GAATGTTCAAAAAATTGCTCGAATGATTGGATCGTCTTGAATACTTTAACGAATTAAAGTTATGA
580 GAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
9069 AAG
645 AAG
* * * * *
9072 AACTCGTAAAAGTTT-ACCAAGTTTGGAAGGTCGACCACGAACCAAGAGAGAAACAATTCTCAAC
1 AACTCGTAAAAGTTTGA-CAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAC
* * * * *
9136 -TAAAAAAGTTTTTAATTCAATGAGCAAAACTTGTTTACAAAATGGCAAACTATTTAGACAAAAT
65 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * * * * *
9200 GATGCGACTTCTTGAGCATTGAATGCTCGTAAAATT-TTCGAAGGAATGGATCGTCATGAATACT
130 GATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATACT
* * * *
9264 TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAACTTTAGAAGTTCGTCTAAGAAC
195 TTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAAC
* * * * * *
9329 CGAGAGACAAATAATTCTCATGTAAATATGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAT
260 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* *
9394 GACAAACTATTTAGACCAACTGATGCGATTT-TCATAGCATGGAATGTTC-AAAAACTTGCTCGA
325 GACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAA-TTGCTCGA
* * * ** * * * *
9457 AGGATTGAATCATCTAAAATACATTAAGGAGCCGAAGTTATAAAAGAAGTCGTAAAAGTTTGACA
388 ATGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * * * * * *
9522 AGGTCGGAAGTTCATCAAAGAACCAAGAGAGAAACAATTCTAACATAAATAATTTTTCTAATTTA
453 AGATCGAAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT-TAATTCA
* *** * * *
9587 ATGATGGAAACCTGTTTA-AAACTGACATACTA-TTTGTACCAAATGATG-TGATTTCCCGAGCA
516 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTTG-ACCAAATGATGCT-ATTT-CCGAGCA
* * * * * *
9649 TGGAATGTTCAGAAAATGGCTCGAAGGATTGCATCGTCTTGCATATTTTAAGGAACTGAAGTTAT
578 TGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
9714 AAAAG
643 AAAAG
* * * * *
9719 AACTCGTAAAAGTTTGACAAGTTCAG-AGCTTCGTCAAATAACCAAGAAAGAAACAATTCTC-AC
1 AACTCGTAAAAGTTTGACAAGGTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAC
* * *
9782 GTAAATAAGTTTTTAATTCAAAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGGCCAAAT
65 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * * * * *
9847 AATGCAATTTCCCGAGCATGGCATGCTCGAAAAATT-TCTCAAATGATTGGATCATCTTGACTAC
130 GATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGT-TCGAAGGATTGGATCATCTTGAATAC
* * ** * * * *
9911 TGTAACGAACCGATGTTATGAAAGAACTCGTAAAAGTTTGAAAAAG-TCGGAAGTTCGTCCACA-
194 TTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTG-ACAAGTTCAGAAGTTCGTCCA-AG
* *** *
9974 AACCAAGAGAGAAACAATTCTCACGTAGATAAGTTTTTAATTCAAAGATGTAAACTTGCTTACAA
257 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * ** * * *
10039 AATGACAGACTATTTTGACCAAATGATGTTATTTCTCGAGCACGGAATGCTCGAAAAATTGTTCG
322 AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCG
* ** ** * *
10104 AATGATTGGATCGTCTTGAATATTTTAACAAACTGAAGTTATGAAA-CACTCGTAAAAGTTTGAC
387 AATGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * * * *
10168 AAGTTC-AGAAGTTCATCCACGAACCAAGAGAGAAACAATTCTCAAGTAAATATGTTTTCAATTC
452 AAGATCGA-AAGTTCGTCCA-AAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * ** * ***
10232 AAAGACCAAAACTAGTTTACAAAATGGCAAACTATTCAGACAAAATGATG-TGATTTATTAAGCA
515 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCT-ATTT-CCGAGCA
** * * *
10296 TGGAATGTTCACAAAATTGCTCGAAGGAATGGATCGACTTGAATACTTTAAGGAACCGATGTTAT
578 TGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
10361 AAAAG
643 AAAAG
* * *
10366 AACTCGTAAAAGATTGATAAGGTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC-ACG
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
* * * *
10430 TAATTAATTTTTTAATTCAAAGACCAAAACTTGTTTA-AAGATGACAAACTATTTATACCAAATG
66 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * *
10494 ATGAGATTTCTCGAGCATTGAATGTTC-AGAAAATTGCTAGAAAGATTGCATCATCTTGAATACT
131 ATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGTTCGAAGGATTGGATCATCTTGAATACT
* * * ** *
10558 TTAAGGAA-TCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTC-GGAGCTTCGTAGAATA
195 TTAAGGAACT-AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAG-TTCGTCCAAGA
* *
10621 ACCAAGAGAGAAACAATTCTC-CTGTAAATAAATTTTTAATTCAAAGACCAAAACTTTTTTACAA
258 ACCAAGAGAGAAACAATTCTCAC-GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * *
10685 AATGGA-AAACTATTTTGAGCAAATGATGCGATTTCCCGAGCATGGATTGTTCGGAAAATTGCTC
322 AAT-GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTC
* ** * * ** * * *
10749 AAATGATTTCATCGTCTTGGATACATTAACAAACTAAAGTTATGAAAGAACTAGTAAAAGTTTGA
386 GAATGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * *
10814 CATGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
451 CAAGATCGAAAGTTCGTCCA-AAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
10879 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAGCAAATGATGCGATTTCTTGAGCAT
515 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCTATTTC-CGAGCAT
* * * * * * * * * *
10944 AGACTGTTCGAAAAATTGCTCAAAGTATTGGATCATCTTGAAAACTTTATGGAATCGATGTTATA
579 GGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
11009 AAAG
644 AAAG
* * * * *
11013 AATTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAAAAAATCTC-ACG
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
* * * * * *
11077 TCAATAAGTTTTTAATTTAAAGATCAAAACTTGTTTGCAAAAAGACAACCTATTTAGA-C-AA--
66 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * * * *
11138 AT--GA----TCGAGCACGAAATGTTCGGAAAATT-TCTCGAAGGAATGGATCGTTTTAAATGCT
131 ATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGT-TCGAAGGATTGGATCATCTTGAATACT
* * * *
11196 TTAATGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGATAAGTTTAGAAGTTCATCCAAGAAC
195 TTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAAC
* * **
11261 CAAGAGAGAAACAATTCTCACGTAAATAATTTTTTAATTAAAAGATTAAAACTTGTTTACAAAAT
260 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * * *
11326 GAAAAACTATTTAGAGCAAATGATTCGATTTCCCAAGCATGGAATGTTCGAAAAATTGTTCGAAG
325 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAT
* * *
11391 GATTGGATCGTCTTGTATACTTTAAGGTACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA-
390 GATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
11455 ATTAAGAAA-TTTGTTCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
455 A-T-CGAAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * *
11519 AGACCAAAACTTGTTTAGAAAATTACAAACTATTTTGACCAAATGATGCAATTTCTCGAGCATGG
517 AGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCTATTTC-CGAGCATGG
* * * ** *
11584 AATGTTTGGAAAATTGCTCGAATGATTGGTTCGTCTTGAATACTTTAACAAACCGAAGTTATGAA
581 AATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
11649 AG
646 AG
* * * *
11651 AACTCATAAAAGTTTGACAAGGTCGAAAGTTCATCCACA-AACCAAGAGAGAAACAATTCT-AAT
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCAAC
* * *
11714 GTAAACAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGGCAGACTATTTTA-ACCAAA
65 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA-TTTAGACCAAA
* * * **
11778 TGATGCTATTTC-CTGAGCATGGAATGTTCAAAAAATTGCTCGAATAATTGGATCATCTTGAATA
129 TGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATA
* * * * * *
11842 ATTTAACGAACTGAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCATCCACG
193 CTTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAG
* *
11906 AACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTAGTTTACAA
257 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * * ** *
11971 AATGGCAAACTATTCAGACAAAATGATACGATTTATTAAGCATGGAATGTTTGAAAAATTGCTCG
322 AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCG
* * * * *
12036 -ATGGAATGGATTGTCTTGAATACTTTAAGGAACCTACGTTATAAAAGAACTTGTAAAAGTTTGA
387 AAT-GATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * * * * * *
12100 CAAGTTTGGAAGTTCGTCTAAGAACCGAGAGACAAATAATTCTCATGTAAATAAGTTTTTAATTC
451 CAAGATCGAAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * *
12165 AAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC-AATAGATG-TGATTTTCCGAGT
515 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAAT-GATGCT-A-TTTCCGAGC
* * * * ** *
12228 GTGGAATGTTCGAAAAATTGCTCAAAGGATTGGATCATCTTGAATACTTTAAAAAACCAAAGTTA
577 ATGGAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
12293 TAAAAG
642 TAAAAG
* * * * *
12299 AACTTGTAAAAGTTTGACAAGGTCGAAAGTTTGTCCAAGAACCATGAGAGAAACAATTCTC-ATG
1 AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
* * *
12363 TAAATAATTTTTTAAATT-AAAAACCAAAACTTGTTTA-AAAATGACAAACTATTTATACCAAAT
66 TAAATAAGTTTTT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * * * *
12426 AATGCGATATCCCGAGCATGGAACGTTCAAAAAATTGCTCGAAGGATTGTATCATCTTGAATACT
130 GATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATACT
* * *
12491 TTAAGGAACCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCAG-AGCTTCGTCCAATAA
195 TTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAG-TTCGTCCAAGAA
* * ** *
12555 CCAAGAGAGAAACAATTCGCACGTAAATAAGTTTTTAACTCAAAGACCAAATGTTGTTTACATAA
259 CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
* * * * * * *
12620 TGACAAACTATTTTGACCAAATGACGTGACTTCCCGAGAATGGAATGTTTGAAAAATTGCTCGAA
324 TGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * *
12685 TGATTGGATCGTCTTGAATAATTTAACGAACCAATGTTATGAAAGAACTCGTAAAAGTTTGAGAA
389 TGATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * * *
12750 GATCGAAAGTTTGTCGACAAACCAAGAGAGAAACAATTGTCACGTAAAAAAGTGTTTAACTCAAA
454 GATCGAAAGTTCGTCCA-AAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* *
12815 GACCAAAACTTGCTTACAAAATGGCAAACTATTTTGACCAAATGATGCTATTTCTCGAGCATGGA
518 GACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCTATTTC-CGAGCATGGA
* * * * *** *
12880 ATGTTTGGAAAATTGCTCAAAAGATTGGATCATCTTGAATACTTT-AGTGATTTGAAGTTATGAA
582 ATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAG-GAACCGAAGTTATAAA
12944 AG
646 AG
* * * * * *
12946 AACTCGTAAAAGTTTGACAAGTTC-AAATGTTTGTCCACGAACCAAGAGATAAACAATACTCAA-
1 AACTCGTAAAAGTTTGACAAGGTCGGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAC
*
13009 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGGA-AAACTATTTAGACCAAA
65 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAA
* ** * ** *
13073 TGATGCAATTTCTTAAGCATGGATTGTTCGGCAAATTGCTT-GAAGGAATGGATCATCTTGAATA
129 TGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTG-TTCGAAGGATTGGATCATCTTGAATA
* * ** * * * * * *
13137 CTTTACGAAACCGACGTGATAAGAGAACTCGTAATAGTTTGACAAGTTTAGAAGTTCGTCTAAGA
193 CTTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
* * * * *
13202 ACCCAA-AGACAAATAATTCTCACGTAAATAAGTTTTTAATTCAAGGACAAAAACTTCTTTACAA
258 A-CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
13266 AATGACAAACTATTTAGACCAA
322 AATGACAAACTATTTAGACCAA
13288 TTAATGTCAT
Statistics
Matches: 7167, Mismatches: 1236, Indels: 519
0.80 0.14 0.06
Matches are distributed among these distances:
615 2 0.00
616 205 0.03
617 17 0.00
618 55 0.01
619 238 0.03
620 17 0.00
621 2 0.00
622 4 0.00
623 2 0.00
624 7 0.00
625 222 0.03
626 9 0.00
627 129 0.02
628 111 0.02
629 256 0.04
630 27 0.00
631 2 0.00
632 4 0.00
633 3 0.00
634 4 0.00
635 6 0.00
636 7 0.00
637 265 0.04
638 983 0.14
639 478 0.07
640 336 0.05
641 6 0.00
642 8 0.00
643 5 0.00
644 4 0.00
645 19 0.00
646 363 0.05
647 1826 0.25
648 1203 0.17
649 339 0.05
650 3 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (647 bp):
AACTCGTAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAACG
TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
ATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGATTGGATCATCTTGAATACTT
TAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACC
AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
ACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAATG
ATTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGA
TCGAAAGTTCGTCCAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
CAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGCTATTTCCGAGCATGGAATGT
TCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
Found at i:13766 original size:216 final size:215
Alignment explanation
Indices: 13314--17746 Score: 4846
Period size: 216 Copynumber: 20.7 Consensus size: 215
13304 AGCATTGAAG
* * * * *
13314 GAACCGAAGTTATAAAAGAACTCGTAAAAGATTAATAA-TGTCGGGAGTTCATCCAAGAACCAAG
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TC-GAAGTTCATCCAAGAACCAAG
* * ** *
13378 AGAGAAACAATTCTCACGTAATTAATTTTTTAATTCAAAGACCAAAACTTGTTTA-AGGATGACA
64 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAA
* * * *
13442 AACTATTTATACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCAAATGATT
129 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATT
* * *
13507 GCATTGTCTTGAATACTTTAAG
194 GGATCGTCTTGAATACTTTAAC
** * * * *
13529 GAACCAAAGTTATAAAAGAACTCATAAAAGTTTAACAAGTTCGGAGCTTCATCCAATAACCAAGA
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAG-TTCATCCAAGAACCAAGA
* *
13594 GAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGATTACAAAATGAAAA
65 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAA
* * *** * *
13659 ACTATTTTGAGCAAATGATGCGATTTCTTTAGCATGGAATGTTCAAAAAATTGCTCGAAAGATTG
130 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTG
* *
13724 CATCGTCTTGGATACTTTAAC
195 GATCGTCTTGAATACTTTAAC
* ** *
13745 GAACTGAAGTAATGGAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCATGAACCAAGA
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCATCCAAGAACCAAGA
* * *
13810 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAGCTTGTTTACAAAATGACAA
65 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAA
* * ** * * * *
13875 ACTATTTAGACCAAATAATGGGATTTCTTGAGCATAGAATGTTCGAAAAAATTGCTCAAAGTACT
130 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAAATTGCTCGAAGGATT
* * * **
13940 GGATCGCCTTGAAAACATTATG
194 GGATCGTCTTGAATACTTTAAC
* * *
13962 GAA-TCGATGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
1 GAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAGTTCATCCAAGAACCAAG
* * * * * *
14026 AGAGAAAAAAATCTCACGTGAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAAAGACA
64 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAA
* * * * * *
14091 ACCTATTTAGACCAAATGAAAGC-A-----C-A--A---AATGTTCGATAAATTGCTCAAACGAA
129 AACTATTTAGACCAAATG-ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAT
14144 TGGATCGTCTTGAATACTTTAAC
193 TGGATCGTCTTGAATACTTTAAC
* * *
14167 GAACTGAAGTTGTAAAAGAACTCGTAAAAGTTTAACAAGTTCAGAAGTTCATCCAAGAACGAAGA
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAGA
* * *
14232 GAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAAGACCAAATCTTGTTTACAAAATGACAA
65 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAA
* ** * *
14297 ACT-TTTTGACCAAATGATGCGATTTCCTTAGAATGGAATGTTCGAAAAATTGCTGGAAGGATTG
130 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTG
14361 GATCGTCTTGAATACTTTAAC
195 GATCGTCTTGAATACTTTAAC
* * * ** *
14382 TAACCGAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTTGT-CAACGAATCAAG
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCATCCAA-GAACCAAG
* * * * **
14446 AGAGAAACAATTTTCAAGTAAATAAGTTTTTAATTCAAGGATCAAAACTTACTTACAAAATG-AA
64 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAA
* * *
14510 AACTATTTAGA-C-AA-G-T--GATTTGCCGGGCAT-GAATGTTTG-AAAATTGCTCGAAGGATT
129 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATT
*
14567 GGATCATCTTGAATACTTTAA-
194 GGATCGTCTTGAATACTTTAAC
* * * *
14588 GTAA-TCGAAGTTATAAAAGAACTTGTAAAGGTTTGACAAGGTTAGAAGTTCGA-CAAAGAACCA
1 G-AACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAA-GTTCGAAGTTC-ATCCAAGAACCA
* * * *
14651 AGTGAGAAACAATTCTCACGTAAAATAATTTTTTGATTCAAAGACCAAAACTTGTTTA-AAGAT-
62 AGAGAGAAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
* * *
14714 AACAAACTATTTAGACCCAATGATGCAATTTCTCGAGCATGGAATGTTC-AGAAAATTGCTCGAA
126 AA-AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
** * *
14778 TAATTGCATCGTCTTGAATATTTTATA-
189 GGATTGGATCGTCTTGAATACTTTA-AC
* * * *
14805 GAA-TCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAGCTTCATCCAATAACCAAG
1 GAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAG-TTCATCCAAGAACCAAG
* * ** * * *
14869 AGAGAAATAATTTTCGTGTAAATAAGTTTTTAATTCAAAGACCGAAACTTGTTTACAAAAAGGAA
64 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAA
* ** * * * * * **
14934 AACTATTTTGGGCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAATTTGTTGGAATAATT
129 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATT
* *
14999 AGATCTTCTT-AGATACTTTAAC
194 GGATCGTCTTGA-ATACTTTAAC
* * * ** ** * * *
15021 GAACTGAAGTTATAAAATAACTCGTAAAAGTTTGATAAGTTTGAAAGTTTGTCTTATAACTAGGA
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCATCCAAGAACCAAGA
* * * * *
15086 GAGAACCAATTCTCACGTAAATAAGATGTTAATTCAAAGACCCAAATTTGTTTACAAAATGAAAA
65 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAA
** * * ** *
15151 ACTATTTTCA-CTAATGATGTGATTTCTTGAGCATGGAATGTTCGAAAAATTGCTCGAATGATTG
130 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTG
*
15215 GATCGTCTTGAATACTTCAAC
195 GATCGTCTTGAATACTTTAAC
* * * * *
15236 GAACCGATGTTATTAAAGAACTAGTAAATA-TTTGAGAAGTTCAGAAGTTCATCCAAGAACCAAG
1 GAACTGAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAG
* * * *
15300 AGAGAAACAATTCTCACGTAAATAATTTTTTAATTCAGAGACCAAAACTTTTTTACAAAATGACA
64 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAA
* * * *
15365 AACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCAAATGATT
129 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATT
* *
15430 GGATCATCTTGAATACTTTAAT
194 GGATCGTCTTGAATACTTTAAC
* * * * ** * * *
15452 GTACAGAAGTTATAAACGAACTCGTAAGAGTTTGACAAGGACAAAAGTTCATCTAAGAACCAAGG
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAGA
* * *
15517 GAGAAACAATTCTCACGTAAATAAGTTTCTAATTCAAGGACAAAAACTTGTTTACAAAATGAAAA
65 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAA
* * * * * *
15582 ACTATTTAGACCAAATGATGCAATTTCCCGAGCAAGGAATGATCAAAAAATTTCTTGAAGGATTG
130 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTG
* * * *
15647 GATCGTTTTAAACACTTTAAG
195 GATCGTCTTGAATACTTTAAC
* * * * * * * *
15668 GAACCGGAGTTATAAATGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCTATAACTAAGG
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCATCCAAGAACCAA-G
* *
15733 AGAGAAACAATTGTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAA
64 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAA
** * * * * * *
15798 AACTATTTTCATCAAATGATGCAATTTCCCGAGAATAGAATGTTCGAAAAACTGCTCGAATGATT
129 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATT
*
15863 GGATCATCTTGAATACTTTAAC
194 GGATCGTCTTGAATACTTTAAC
* * * * * * * **
15885 AAACCGAAGTTATGAAAGAACTGGTAAAAGGTTGACACGTTC---G-TC-T--AGGAATGAAGAG
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAGTTCATCCAAGAACCAAGAG
* *
15943 AGAAA-AGATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAACACTTGTTTACAAAATGAAAA
66 AGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAA
* * * *** * *
16007 GCTATTTACACCAAATGATTCGATTTATTGAGCATGGAATGTTCAAAAAATTGCTCGAAGGATTC
130 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTG
* * **
16072 AATAGTCTTGAATACTTTATG
195 GATCGTCTTGAATACTTTAAC
* * * *
16093 GAACCGATGTTATAAAAGAACTCGTAATAA-TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAA
1 GAACTGAAGTTATAAAAGAACTCGTAA-AAGTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAG
* * * *
16157 AGGGAAACAATTCTCATGTAAATAATTTTTTAATT-AAATGACCAAAACTTGTTTACAAAATGAC
64 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAACTTGTTTACAAAATGAA
* * * *
16221 AAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTT--AAAATTTCCTCGAAGGAA
128 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAT
* * *
16284 TGCATCGTCTTGAATACTGTAAG
193 TGGATCGTCTTGAATACTTTAAC
* * * * * * *
16307 GAACTAAAGTTATAAAAGAACTCATAAAAGTTTAACAAGTTTAGACGTTCGTCCAAGAACCTAGA
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAGTTCATCCAAGAACCAAGA
* * * * *
16372 GAGAAACAATTCTCACGTAAATAATTTTTTAACTCAAAGACCAAAACTTTTTTACAAAAAGACAA
65 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAA
* * * **
16437 ACTACTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTCTAAAAATTGCTCGAAGGAAGG
130 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTG
*
16502 GATCGTCTTGAATACTTTAAT
195 GATCGTCTTGAATACTTTAAC
*
16523 GAA-TCGAAGTTATAAAATAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAG
1 GAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAG
* * *
16587 AGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAATGACA
64 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAA
* * *
16652 AACAATTTAGACCAATTGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATT
129 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATT
*
16717 GGATCATCTTGAATACTTTAA-
194 GGATCGTCTTGAATACTTTAAC
* *
16738 GAAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAG
1 GAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAG
* * *
16803 AGAGAAACAATTCTCACGTAAAATAATTTTTTAATTCAAAGACCAAAACTTGTTTA-AAGATGAC
64 AGAGAAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAA
*
16867 AAACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCGAAGGA
128 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGA
* ***
16931 TTGCATCGT-TCTGAATACTTTTTG
192 TTGGATCGTCT-TGAATACTTTAAC
* * * * *
16955 GAACCGGAGTTATAAAAGAACTCGAAAAAGTTTGACAAGTTC-AGAGCTTCGTCCAATAACCAAG
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AG-TTCATCCAAGAACCAAG
* * * * * *
17019 AGAGAAACAATTTTCATGTAAATAA-TATTTTAATTCAAAGATCGAAACTTGTTTACAAAAAGGA
64 AGAGAAACAATTCTCACGTAAATAAGT-TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAA
* ** * * * *
17083 AAACTATTTTGATTAAATGATGCCATTTCCCTAGCATGGAATGTTCGAAAAATTGCTGGAATGAT
128 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAT
* *
17148 TGGATCGTCTTGGACACTTTAAC
193 TGGATCGTCTTGAATACTTTAAC
* * * * *
17171 GAAGTGAAGTTATAAAATAACTCGTAAAACTTTGACAAGTTCAGAAGTTCATCGAAGTACCAAGA
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAGA
* * *
17236 GATAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTTTTTACAAAATGAAAA
65 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAA
** * ** * * * *
17301 ACTATTTAGACGGAATGATCCGATTTCTTGAGAATGGAATGTTCGAAAAATTACTCGAAGGACTC
130 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTG
* **
17366 GAT-ATCTTGAATACTTTATG
195 GATCGTCTTGAATACTTTAAC
* * * * *
17386 GAAAC-GATGTTATAAAAGAACTCGTAATAGTTTGACAAGCTCAGACGTTCATCCAAGAACCTAG
1 G-AACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAG
* * * * * *
17450 AGAGAAATAATTCTCACGTAAATAATTTTTTAATTCAAAGAACAAAACTTATTTACAAAAAGACA
64 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAA
* * *
17515 AACTACTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTTG-AAAATTGCTCGAAGGAA
129 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAT
* * *
17579 TGGATTGTCTGGAATACTTTAAT
193 TGGATCGTCTTGAATACTTTAAC
* * * * *
17602 TAACTGAAGTCATAAAAGAATTCGTAAAAGTTTGACAAGTACAAAAGTTCATCCAAGAACCAAGA
1 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCATCCAAGAACCAAGA
*
17667 GAGAAACAATTCTCACATAAATAAGTTTTTAATTC-AAGCACCAAAACTTGTTTACAAAATGAAA
65 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACCAAAACTTGTTTACAAAATGAAA
*
17731 AATTATTTAGACCAAA
129 AACTATTTAGACCAAA
Statistics
Matches: 3543, Mismatches: 578, Indels: 193
0.82 0.13 0.04
Matches are distributed among these distances:
203 3 0.00
204 15 0.00
205 146 0.04
206 9 0.00
207 103 0.03
208 217 0.06
209 17 0.00
210 3 0.00
211 4 0.00
212 6 0.00
213 7 0.00
214 206 0.06
215 708 0.20
216 1722 0.49
217 371 0.10
218 6 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (215 bp):
GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAGTTCATCCAAGAACCAAGAG
AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAA
CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGG
ATCGTCTTGAATACTTTAAC
Found at i:16950 original size:432 final size:434
Alignment explanation
Indices: 13318--17746 Score: 4874
Period size: 431 Copynumber: 10.3 Consensus size: 434
13308 TTGAAGGAAC
* * * * * *
13318 CGAAGTTATAAAAGAACTCGTAAAAGATTAATAATGTCGGGAGTTCATCCAAGAACCAAGAGAGA
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAGAGAGA
* * **
13383 AACAATTCTCACGTAATTAATTTTTTAATTCAAAGACCAAAACTTGTTTA-AGGATGACAAACTA
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
* * * * *
13447 TTTATACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCAAATGATTGCATT
131 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGATTGCATC
* * * *
13512 GTCTTGAATACTTTAA-GGAACCAAAGTTATAAAAGAACTCATAAAAGTTTAACAAGTTC-GGAG
196 GTCTTGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAG
* *
13575 CTTCATCCAATAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAA
261 -TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * *** *
13640 CTTGATTACAAAATGAAAAACTATTTTGAGCAAATGATGCGATTTCTTTAGCATGGAATGTTCAA
325 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
* * * *
13705 AAAATTGCTCGAAAGATTGCATCGTCTTGGATACTTTAACGAACT
390 AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
* ** * *
13750 -GAAGTAATGGAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCATCCATGAACCAAGAGAG
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAG-AAGTTCATCCAAGAACCAAGAGAG
* *
13813 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAGCTTGTTTACAAAATGACAAACT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * ** * * * * * *
13878 ATTTAGACCAAATAATGGGATTTCTTGAGCATAGAATGTTCGAAAAAATTGCTCAAAGTACTGGA
130 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCGAAGGATTGCA
* * * * * **
13943 TCGCCTTGAAAACATT-ATGGAATCGATGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGA
194 TCGTCTTGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGA
* * * * *
14007 AGTTCGTCCAAGAACCAAGAGAGAAAAAAATCTCACGTGAATAAGTTTTTAATTTAAAGACCAAA
259 AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * *
14072 ACTTGTTTACAAAAAGACAACCTATTTAGACCAAATGAAAGC-A-----C-A--A---AATGTTC
324 ACTTGTTTACAAAATGACAAACTATTTAGACCAAATG-ATGCGATTTCCCGAGCATGGAATGTTC
* * * * *
14125 GATAAATTGCTCAAACGAATGGATCGTCTTGAATACTTTAACGAACT
388 GAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
* * * *
14172 -GAAGTTGTAAAAGAACTCGTAAAAGTTTAACAAGTTCAGAAGTTCATCCAAGAACGAAGAGAGA
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAGAGAGA
* *
14236 AACAATTCTAACGTAAATAAGTTTTTAATTCAAAGACCAAATCTTGTTTACAAAATGACAAACT-
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
* ** * * *
14300 TTTTGACCAAATGATGCGATTTCCTTAGAATGGAATGTTC-GAAAAATTGCTGGAAGGATTGGAT
131 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGATTGCAT
*
14364 CGTCTTGAATACTTTAACT--AACCGAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTC-GA
195 CGTCTTGAATACTTTAA-TGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-
** * * * * *
14426 AAGTTTGT-CAACGAATCAAGAGAGAAACAATTTTCAAGTAAATAAGTTTTTAATTCAAGGATCA
258 AAGTTCATCCAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
** * *
14490 AAACTTACTTACAAAATGA-AAACTATTTAGA-C-AA-G-T--GATTTGCCGGGCAT-GAATGTT
322 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * *
14547 TG-AAAATTGCTCGAAGGATTGGATCATCTTGAATACTTTAA-GTAAT
387 CGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
* * * * *
14593 CGAAGTTATAAAAGAACTTGTAAAGGTTTGACAAGGTTAGAAGTTCGA-CAAAGAACCAAGTGAG
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTC-ATCCAAGAACCAAGAGAG
* * * *
14657 AAACAATTCTCACGTAAAATAATTTTTTGATTCAAAGACCAAAACTTGTTTA-AAGATAACAAAC
65 AAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * **
14721 TATTTAGACCCAATGATGCAATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAATAATTGCA
129 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGATTGCA
* * * * * *
14786 TCGTCTTGAATA-TTTTATAGAATCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTC-GG
194 TCGTCTTGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGA
* * * ** *
14849 AGCTTCATCCAATAACCAAGAGAGAAATAATTTTCGTGTAAATAAGTTTTTAATTCAAAGACCGA
259 AG-TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * ** *
14914 AACTTGTTTACAAAAAGGA-AAACTATTTTGGGCAAATGATGCGATTTCTCGAGCATGGAATGTT
323 AACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * ** * * *
14978 CGGAAATTTGTTGGAATAATTAGATCTTCTT-AGATACTTTAACGAACT
387 CGAAAAATTGCTCGAAGGATTGGATCGTCTTGA-ATACTTTAACGAAAT
* * ** ** ** * * *
15026 -GAAGTTATAAAATAACTCGTAAAAGTTTGATAA-GTTTGAAAGTTTGTCTTATAACTAGGAGAG
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAG-AAGTTCATCCAAGAACCAAGAGAG
* * * * * *
15089 AACCAATTCTCACGTAAATAAGATGTTAATTCAAAGACCCAAATTTGTTTACAAAATGAAAAACT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
** * * ** * *
15154 ATTTTCA-CTAATGATGTGATTTCTTGAGCATGGAATGTTC-GAAAAATTGCTCGAATGATTGGA
130 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGATTGCA
* * * * * *
15217 TCGTCTTGAATACTTCAA-CGAACCGATGTTATTAAAGAACTAGTAAATA-TTTGAGAAGTTCAG
194 TCGTCTTGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTCAG
* *
15280 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAATTTTTTAATTCAGAGACCAA
258 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* *
15345 AACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTC
323 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * *
15410 GAAAAATTTCTCAAATGATTGGATCATCTTGAATACTTTAATG-TA-
388 GAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
* * * * * *
15455 CAGAAGTTATAAACGAACTCGTAAGAGTTTGACAAGGACAAAAGTTCATCTAAGAACCAAGGGAG
1 C-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAGAGAG
* * * *
15520 AAACAATTCTCACGTAAATAAGTTTCTAATTCAAGGACAAAAACTTGTTTACAAAATGAAAAACT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * * * *
15585 ATTTAGACCAAATGATGCAATTTCCCGAGCAAGGAATGATCAAAAAATTTCTTGAAGGATTGGAT
130 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGATTGCAT
* * * * * *
15650 CGTTTTAAACACTTTAA-GGAACCGGAGTTATAAATGAACTCATAAAAGTTTGACAAGTTC-GAA
195 CGTCTTGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-A
* * * * * *
15713 AGTTCGTCCTATAACTAAGGAGAGAAACAATTGTCACGTAAATAAGATTTTAATTCAAAGACCAA
259 AGTTCATCCAAGAACCAA-GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* ** * * * *
15778 AACTTGTTTACAAAATGAAAAACTATTTTCATCAAATGATGCAATTTCCCGAGAATAGAATGTTC
323 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * *
15843 GAAAAACTGCTCGAATGATTGGATCATCTTGAATACTTTAAC-AAAC
388 GAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
* * * * * * **
15889 CGAAGTTATGAAAGAACTGGTAAAAGGTTGAC-A---C----GTTCGTCTAGGAATGAAGAGAGA
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAGAGAGA
* *
15946 AA-AGATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAACACTTGTTTACAAAATGA-AAAGC
66 AACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA-C
* * *** *
16009 TATTTACACCAAATGATTCGATTTATTGAGCATGGAATGTTCAAAAAATTGCTCGAAGGATT-CA
129 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGATTGC-
* *
16073 ATAGTCTTGAATACTTT-ATGGAACCGATGTTATAAAAGAACTCGTAATAA-TTTGACAAGTTCA
193 ATCGTCTTGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAA-AAGTTTGACAAGTTCA
* * * * *
16136 GAAGTTCGTCCAAGAACCAAAAGGGAAACAATTCTCATGTAAATAATTTTTTAATT-AAATGACC
257 GAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACC
*
16200 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGT
321 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
16265 T--AAAATTTCCTCGAAGGAATGCATCGTCTTGAATACTGTAAGGAACT
386 TCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
* * * * * * * *
16312 -AAAGTTATAAAAGAACTCATAAAAGTTTAACAAGTTTAGACGTTCGTCCAAGAACCTAGAGAGA
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAGAGAGA
* * * *
16376 AACAATTCTCACGTAAATAATTTTTTAACTCAAAGACCAAAACTTTTTTACAAAAAGACAAACTA
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
* * ** *
16441 CTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTCTA-AAAATTGCTCGAAGGAAGGGAT
131 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCGAAGGATTGCAT
* *
16505 CGTCTTGAATACTTTAAT-GAATCGAAGTTATAAAATAACTCGTAAAAGTTTGACAAGTTCAGAA
195 CGTCTTGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAA
* *
16569 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAGGACCAAAA
260 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * *
16634 CTTGTTTACAAAATGACAAACAATTTAGACCAATTGATGTGATTTCCCGAGCATGGAATGTTCGA
325 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
*
16699 AAAATTGCTCGAAGGATTGGATCATCTTGAATACTTTAA-GAAAT
390 AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
16743 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAGAGAGA
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAGAGAGA
* *
16808 AACAATTCTCACGTAAAATAATTTTTTAATTCAAAGACCAAAACTTGTTTA-AAGATGACAAACT
66 AACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
*
16872 ATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGATTGCAT
130 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGATTGCAT
* * *
16937 CGT-TCTGAATACTTT-TTGGAACCGGAGTTATAAAAGAACTCGAAAAAGTTTGACAAGTTCAG-
195 CGTCT-TGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGA
* * * * * *
16999 AGCTTCGTCCAATAACCAAGAGAGAAACAATTTTCATGTAAATAA-TATTTTAATTCAAAGATCG
259 AG-TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TTTTAATTCAAAGACCA
* * ** * *
17063 AAACTTGTTTACAAAAAGGA-AAACTATTTTGATTAAATGATGCCATTTCCCTAGCATGGAATGT
322 AAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * *
17127 TCGAAAAATTGCTGGAATGATTGGATCGTCTTGGACACTTTAACGAAGT
386 TCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
* * * * * *
17176 -GAAGTTATAAAATAACTCGTAAAACTTTGACAAGTTCAGAAGTTCATCGAAGTACCAAGAGATA
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAGAGAGA
* * *
17240 AACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTTTTTACAAAATGAAAAACTA
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
** * ** * * *
17305 TTTAGACGGAATGATCCGATTTCTTGAGAATGGAATGTTC-GAAAAATTACTCGAAGGACT-CGA
131 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGATTGC-A
* * * * *
17368 T-ATCTTGAATACTTT-ATGGAAACGATGTTATAAAAGAACTCGTAATAGTTTGACAAGCTCAGA
194 TCGTCTTGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGA
* * * * *
17431 CGTTCATCCAAGAACCTAGAGAGAAATAATTCTCACGTAAATAATTTTTTAATTCAAAGAACAAA
259 AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * *
17496 ACTTATTTACAAAAAGACAAACTACTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTT
324 ACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTC
* * * ** *
17561 G-AAAATTGCTCGAAGGAATGGATTGTCTGGAATACTTTAATTAACT
388 GAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
* * *
17607 -GAAGTCATAAAAGAATTCGTAAAAGTTTGACAA-GTACAAAAGTTCATCCAAGAACCAAGAGAG
1 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGT-CAGAAGTTCATCCAAGAACCAAGAGAG
* * *
17670 AAACAATTCTCACATAAATAAGTTTTTAATTC-AAGCACCAAAACTTGTTTACAAAATGAAAAAT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACCAAAACTTGTTTACAAAATGACAAAC
17734 TATTTAGACCAAA
129 TATTTAGACCAAA
Statistics
Matches: 3353, Mismatches: 538, Indels: 213
0.82 0.13 0.05
Matches are distributed among these distances:
413 1 0.00
416 1 0.00
417 2 0.00
418 2 0.00
419 15 0.00
420 133 0.04
421 39 0.01
422 338 0.10
423 205 0.06
424 117 0.03
425 189 0.06
426 5 0.00
427 2 0.00
428 1 0.00
429 3 0.00
430 318 0.09
431 838 0.25
432 769 0.23
433 368 0.11
434 7 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (434 bp):
CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGAACCAAGAGAGA
AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGATTGCATC
GTCTTGAATACTTTAATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAG
TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAA
AAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAACGAAAT
Done.