Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003053.1 Kokia drynarioides strain JFW-HI SEQ_115581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5197
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33


Found at i:1327 original size:16 final size:16

Alignment explanation


    Indices: 1306--1337  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       1296 TGACAACTTT

                            
       1306 GGGTTAGGCTCTTGAA
          1 GGGTTAGGCTCTTGAA

                            
       1322 GGGTTAGGCTCTTGAA
          1 GGGTTAGGCTCTTGAA

       1338 AGTATAAATC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.19, C:0.12, G:0.38, T:0.31


Consensus pattern (16 bp):   
GGGTTAGGCTCTTGAA
Done.