Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003055.1 Kokia drynarioides strain JFW-HI SEQ_115583, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3819
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1367 original size:21 final size:23

Alignment explanation


    Indices: 1333--1382  Score: 59
    Period size: 21  Copynumber: 2.3  Consensus size: 23

       1323 TTAGAAGTTA

                    *       *      
       1333 AAAATGATTTGAAAATGAAAAT-
          1 AAAATGATGTGAAAATAAAAATC

                          *        
       1355 AAAAT-ATGTGAAATTAAAAATC
          1 AAAATGATGTGAAAATAAAAATC

                  
       1377 AAAATG
          1 AAAATG

       1383 TTTTTTTAAG


Statistics
Matches: 23,  Mismatches: 3, Indels: 3
        0.79            0.10        0.10

Matches are distributed among these distances:
  21   13  0.57
  22   10  0.43

ACGTcount: A:0.60, C:0.02, G:0.12, T:0.26


Consensus pattern (23 bp):   
AAAATGATGTGAAAATAAAAATC
Done.