Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003057.1 Kokia drynarioides strain JFW-HI SEQ_115588, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1835
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29


Found at i:321 original size:17 final size:15

Alignment explanation


    Indices: 296--334  Score: 51
    Period size: 17  Copynumber: 2.5  Consensus size: 15

        286 AATTTGTACA

                            
        296 TCAATATCAACCAAGT
          1 TCAATATCAACCAA-T

                       *    
        312 TCACATATCAATCAAT
          1 TCA-ATATCAACCAAT

                   
        328 TCAATAT
          1 TCAATAT

        335 GGTATTTCAG


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  15    4  0.19
  16    7  0.33
  17   10  0.48

ACGTcount: A:0.44, C:0.23, G:0.03, T:0.31


Consensus pattern (15 bp):   
TCAATATCAACCAAT
Done.