Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003062.1 Kokia drynarioides strain JFW-HI SEQ_115593, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8292
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31


Found at i:4383 original size:27 final size:28

Alignment explanation


    Indices: 4334--4390  Score: 73
    Period size: 27  Copynumber: 2.1  Consensus size: 28

       4324 TTAACTGCTC

                     *                  
       4334 GTGGCAGCAGTGGAGGAATATCATT-TT
          1 GTGGCAGCAATGGAGGAATATCATTGTT

                         *               
       4361 GTGGCAGCAATGGTGGTAA-ATCATTGTT
          1 GTGGCAGCAATGGAGG-AATATCATTGTT

              
       4389 GT
          1 GT

       4391 TTCCAGCAAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  27   20  0.77
  28    6  0.23

ACGTcount: A:0.25, C:0.11, G:0.33, T:0.32


Consensus pattern (28 bp):   
GTGGCAGCAATGGAGGAATATCATTGTT
Done.