Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003067.1 Kokia drynarioides strain JFW-HI SEQ_115606, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4911
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.31


Found at i:2200 original size:21 final size:21

Alignment explanation


    Indices: 2176--2229  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       2166 TGTGATAGTT

                             *    
       2176 CTACCGATACAAGT-ATGACTA
          1 CTACCGATACAA-TCATCACTA

                   *            *
       2197 CTACCGAAACAATCATCACTT
          1 CTACCGATACAATCATCACTA

                        
       2218 CTACCGATACAA
          1 CTACCGATACAA

       2230 CAAACTCTAG


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  20    1  0.04
  21   27  0.96

ACGTcount: A:0.39, C:0.30, G:0.09, T:0.22


Consensus pattern (21 bp):   
CTACCGATACAATCATCACTA

Found at i:3847 original size:45 final size:45

Alignment explanation


    Indices: 3791--3889  Score: 180
    Period size: 45  Copynumber: 2.2  Consensus size: 45

       3781 ACTTTTCACT

                  *                                      
       3791 TTTATTAAATTTAGTCCTTTAGCTCAAAACTTGCAAATTAACCAG
          1 TTTATTTAATTTAGTCCTTTAGCTCAAAACTTGCAAATTAACCAG

                                                        *
       3836 TTTATTTAATTTAGTCCTTTAGCTCAAAACTTGCAAATTAACCAT
          1 TTTATTTAATTTAGTCCTTTAGCTCAAAACTTGCAAATTAACCAG

                     
       3881 TTTATTTAA
          1 TTTATTTAA

       3890 ATTTCCAACT


Statistics
Matches: 52,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  45   52  1.00

ACGTcount: A:0.34, C:0.16, G:0.07, T:0.42


Consensus pattern (45 bp):   
TTTATTTAATTTAGTCCTTTAGCTCAAAACTTGCAAATTAACCAG
Done.