Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003071.1 Kokia drynarioides strain JFW-HI SEQ_115612, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1127
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20


Found at i:437 original size:139 final size:139

Alignment explanation


    Indices: 1--797  Score: 1321
    Period size: 139  Copynumber: 5.7  Consensus size: 139

                                                                             
          1 TGATGAGACACTGAGAAGAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCAGATGGGATAC
          1 TGATGAGACACTGAGAAGAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCAGATGGGATAC

                               *     *        *          *                *  
         66 TGAGAAGTGAACCAAATTCTTCTTCTTGATGAGACACAGAGAAGCGGATTGAAACAGTGATGAGA
         66 TGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAGATTGAAACAGTGATGGGA

                     
        131 TCATCTTCC
        131 TCATCTTCC

                                    *                              *         
        140 TGATGAGACACTGAGAAGGAA-ACTCAAACGAGGCTCGAAACGAGCAAATCTTCCGGATGGGATA
          1 TGATGAGACACTGAGAA-GAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCAGATGGGATA

              *                               *                              
        204 CTAAGAAGTGAACCAAAATTCGTCTTCCTGATGAAATACAGAGAAGCAGATTGAAACAGTGATGG
         65 CTGAGAAGTGAACC-AAATTCGTCTTCCTGATGAGATACAGAGAAGCAGATTGAAACAGTGATGG

                       
        269 GATCATCTTCC
        129 GATCATCTTCC

                                                                   *         
        280 TGATGAGACACTGAGAAGAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCATATGGGATAC
          1 TGATGAGACACTGAGAAGAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCAGATGGGATAC

                        *   *             * *                                
        345 TGAGAAGTGAACAAAAATCGTCTTCCTGATAAAATACAGAGAAGCAGATTGAAACAGTGATGGGA
         66 TGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAGATTGAAACAGTGATGGGA

                     
        410 TCATCTTCC
        131 TCATCTTCC

                                        *                                    
        419 TGATGAGACACTGAGAAGAAGACCCAAATGAGGCTCGAAACGAGCAAATCTTCCAGATAGGG-TA
          1 TGATGAGACACTGAGAAGAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCAGAT-GGGATA

                                                          *                  
        483 CTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGGATTGAAACAGTGATGGG
         65 CTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAGATTGAAACAGTGATGGG

                      
        548 ATCATCTTCC
        130 ATCATCTTCC

                                                                             
        558 TGATGAGACACTGAGAAGAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCAGATGGGATAC
          1 TGATGAGACACTGAGAAGAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCAGATGGGATAC

              *                                                   *          
        623 TGCGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAGATTGAAATAGTGATGGGA
         66 TGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAGATTGAAACAGTGATGGGA

                     
        688 TCATCTTCC
        131 TCATCTTCC

                         *      *                       * *  *               
        697 TGATGAGACACTGGGAAGAAAACCCAAACGAGGCTCGAAACGAGTAGATATTCCAGATGAGG-TA
          1 TGATGAGACACTGAGAAGAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCAGATG-GGATA

              *                                  
        761 CTAAGAAGTGAACCAAATTCGTCTTCCTGATGAGATA
         65 CTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATA

        798 AGCGAATTGA


Statistics
Matches: 618,  Mismatches: 34, Indels: 12
        0.93            0.05        0.02

Matches are distributed among these distances:
 138    3  0.00
 139  483  0.78
 140  132  0.21

ACGTcount: A:0.37, C:0.19, G:0.25, T:0.20


Consensus pattern (139 bp):   
TGATGAGACACTGAGAAGAAGACCCAAACGAGGCTCGAAACGAGCAAATCTTCCAGATGGGATAC
TGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAGATTGAAACAGTGATGGGA
TCATCTTCC

Done.