Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003074.1 Kokia drynarioides strain JFW-HI SEQ_115617, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1395
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.39


Found at i:467 original size:30 final size:30

Alignment explanation


    Indices: 412--551  Score: 113
    Period size: 30  Copynumber: 4.7  Consensus size: 30

        402 CTATTTTACA

                       *   *     *      * 
        412 CAAAAA-TCAAATTTCACCCCTAAACTTCC
          1 CAAAAATTCAATTTTAACCCCCAAACTTTC

                           *             *
        441 CAAAAATTCAATTTTTACCCCCAAACTTTT
          1 CAAAAATTCAATTTTAACCCCCAAACTTTC

                    **          *         
        471 CAAAAATTTGATTTTAACCCTCAAACTTTC
          1 CAAAAATTCAATTTTAACCCCCAAACTTTC

            *                    **   *    
        501 TAAAAATT-ACATTTTAACCCTTAAATTTTC
          1 CAAAAATTCA-ATTTTAACCCCCAAACTTTC

            *    *         *     
        531 TAAAATTTCAATTTTGACCCC
          1 CAAAAATTCAATTTTAACCCC

        552 ATTTTCCCTT


Statistics
Matches: 91,  Mismatches: 17, Indels: 5
        0.81            0.15        0.04

Matches are distributed among these distances:
  29    6  0.07
  30   84  0.92
  31    1  0.01

ACGTcount: A:0.38, C:0.25, G:0.01, T:0.36


Consensus pattern (30 bp):   
CAAAAATTCAATTTTAACCCCCAAACTTTC
Done.