Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003075.1 Kokia drynarioides strain JFW-HI SEQ_115618, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8879
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.35


Found at i:8436 original size:15 final size:16

Alignment explanation


    Indices: 8410--8441  Score: 57
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       8400 ACTTTGCCAG

                            
       8410 AACTAGAACCAGAACC
          1 AACTAGAACCAGAACC

                            
       8426 AACTA-AACCAGAACC
          1 AACTAGAACCAGAACC

             
       8441 A
          1 A

       8442 GGACCAATTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   11  0.69
  16    5  0.31

ACGTcount: A:0.53, C:0.31, G:0.09, T:0.06


Consensus pattern (16 bp):   
AACTAGAACCAGAACC
Done.