Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003076.1 Kokia drynarioides strain JFW-HI SEQ_115619, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5008
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34


Found at i:2658 original size:17 final size:17

Alignment explanation


    Indices: 2636--2677  Score: 75
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       2626 CGTACGGAAA

                             
       2636 GCTGTCTTCGGAACGTC
          1 GCTGTCTTCGGAACGTC

                             
       2653 GCTGTCTTCGGAACGTC
          1 GCTGTCTTCGGAACGTC

               *    
       2670 GCTTTCTT
          1 GCTGTCTT

       2678 TTACTTTCAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  17   24  1.00

ACGTcount: A:0.10, C:0.29, G:0.26, T:0.36


Consensus pattern (17 bp):   
GCTGTCTTCGGAACGTC
Done.