Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003077.1 Kokia drynarioides strain JFW-HI SEQ_115620, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8711
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:8466 original size:21 final size:23

Alignment explanation


    Indices: 8442--8493  Score: 58
    Period size: 21  Copynumber: 2.4  Consensus size: 23

       8432 GTTAAGATAA

                     *    *        
       8442 TAGGCTTGTGGGT-GTTGGGC-T
          1 TAGGCTTGTAGGTAATTGGGCAT

                                   
       8463 TAGG-TT-TAGGTAATTGGGCAT
          1 TAGGCTTGTAGGTAATTGGGCAT

                      
       8484 TAGGCTTGTA
          1 TAGGCTTGTA

       8494 TTTTTTTCGT


Statistics
Matches: 25,  Mismatches: 2, Indels: 6
        0.76            0.06        0.18

Matches are distributed among these distances:
  19    4  0.16
  20    8  0.32
  21    9  0.36
  22    2  0.08
  23    2  0.08

ACGTcount: A:0.15, C:0.08, G:0.38, T:0.38


Consensus pattern (23 bp):   
TAGGCTTGTAGGTAATTGGGCAT

Found at i:8688 original size:2 final size:2

Alignment explanation


    Indices: 8683--8711  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       8673 ACACACATAC

                                                       
       8683 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.