Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003078.1 Kokia drynarioides strain JFW-HI SEQ_115622, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1218
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23


Found at i:551 original size:55 final size:55

Alignment explanation


    Indices: 467--578  Score: 188
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        457 TACTCAGACA

                       * *         *      *                        
        467 AAGCATTTCATTACGTGCACTGGGAACATGGTACTCAATAAGGACATAACCACAT
          1 AAGCATTTCATCAAGTGCACTGGAAACATGCTACTCAATAAGGACATAACCACAT

                                                                   
        522 AAGCATTTCATCAAGTGCACTGGAAACATGCTACTCAATAAGGACATAACCACAT
          1 AAGCATTTCATCAAGTGCACTGGAAACATGCTACTCAATAAGGACATAACCACAT

              
        577 AA
          1 AA

        579 CAGAAACCAT


Statistics
Matches: 53,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  55   53  1.00

ACGTcount: A:0.39, C:0.22, G:0.16, T:0.22


Consensus pattern (55 bp):   
AAGCATTTCATCAAGTGCACTGGAAACATGCTACTCAATAAGGACATAACCACAT
Done.