Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01000309.1 Kokia drynarioides strain JFW-HI SEQ_111070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26174
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Found at i:4574 original size:29 final size:29
Alignment explanation
Indices: 4377--4753 Score: 298
Period size: 30 Copynumber: 12.8 Consensus size: 29
4367 TTTCGGAGAA
* **
4377 TTTGGGGTTAAAATATGCTTTTGGAAAAG
1 TTTGGGGTTAAAATGTAATTTTGGAAAAG
* * * *
4406 TTTTAGGGTGAAAATGTGATTTTGGAAAGG
1 -TTTGGGGTTAAAATGTAATTTTGGAAAAG
* ** **
4436 TTTGAGAGTTAAAATGTGGTTTTGGGGAAG
1 TTTG-GGGTTAAAATGTAATTTTGGAAAAG
*
4466 TTTAGGGGTTAAAATGTTATTTTGGAAAAG
1 TTT-GGGGTTAAAATGTAATTTTGGAAAAG
* *
4496 TTTAGGGGTTAAAATGCAATTTTGGAGAAG
1 TTT-GGGGTTAAAATGTAATTTTGGAAAAG
*
4526 TTTGGGTGTTAAAACT-TAATTTTAGAAAAG
1 TTTGGG-GTTAAAA-TGTAATTTTGGAAAAG
* * *
4556 -TTGGGGCTCAAAATGTAATTTTGTAGAAG
1 TTTGGGG-TTAAAATGTAATTTTGGAAAAG
* *
4585 TTT-GGGTTAAAATGCAAGTTTGGAAAAG
1 TTTGGGGTTAAAATGTAATTTTGGAAAAG
*
4613 TTTGAGGTTAAAATGTAATTTTGGAAAAG
1 TTTGGGGTTAAAATGTAATTTTGGAAAAG
* * * *
4642 TTTGAGGTGAAAATATGACTTTT-GAAAAG
1 TTTGGGGTTAAAATGT-AATTTTGGAAAAG
* ** *
4671 TTTAGGGGTAAAAATACAATTTTGGAGAAG
1 TTT-GGGGTTAAAATGTAATTTTGGAAAAG
*
4701 TTTAGGGGTGAAAAT-TCAATTTT-GAAAAGG
1 TTT-GGGGTTAAAATGT-AATTTTGGAAAA-G
* *
4731 TTTGAGGGTCAAAATATAATTTT
1 TTTG-GGGTTAAAATGTAATTTT
4754 TAAATAAAAT
Statistics
Matches: 285, Mismatches: 47, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
28 22 0.08
29 85 0.30
30 175 0.61
31 3 0.01
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (29 bp):
TTTGGGGTTAAAATGTAATTTTGGAAAAG
Found at i:5745 original size:2 final size:2
Alignment explanation
Indices: 5729--5779 Score: 77
Period size: 2 Copynumber: 26.0 Consensus size: 2
5719 GACATTAATA
* *
5729 AT AT A- AT AA AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5770 AT AT AT AT AT
1 AT AT AT AT AT
5780 TTAAATTGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7018 original size:209 final size:208
Alignment explanation
Indices: 6646--7466 Score: 1047
Period size: 209 Copynumber: 3.9 Consensus size: 208
6636 CATCTTTTGG
* * * *
6646 TCCACATCTCTATATCTCATCAGGAA-AGTGGATTTGGTTCACTTCTCTGCATCTCGTCAGGAAG
1 TCCACTTCTCTGTATCTCATCAGGAAGA-CGGATTTGGTTCACTTCTCTGCATCTCATCAGGAAG
* *
6710 ATGACCACTTTATTGCTTTTACCCACTTCTCTGTATCTCACCAAGAAGATGAGGTTTAAAAGTTT
65 ATGACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCA-TAAGAAGATGAGGTTTAAAAGTTT
* * ** * * * *
6775 CACTCACATTGAGCTTTGCTTCATTGAATTAGTCTTTTTTTTTGTATCTCATTAGGAAGATGACC
129 CACTCACATTGAGCTTCGCTTCACTGAATTAGTCTACTTCTCTGTATCTCATCAAGAAGATGACC
*
6840 G-TTCTATTATTTTAA
194 GCTTC-ATTGTTTTAA
*
6855 TCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTAT-ACTTCTCTGTATCTCATCAGGAAG
1 TCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGT-TCACTTCTCTGCATCTCATCAGGAAG
* *
6919 ATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCTTATAAGGAAGATGAGGTTTAAAAGTTT
65 ATGACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCATAA-GAAGATGAGGTTTAAAAGTTT
* * *
6984 CACTCATATTAAGCTTCGCTTCACTGAATTAGTCTACTTCTCTGTATCTCATCAAGAAGATGATC
129 CACTCACATTGAGCTTCGCTTCACTGAATTAGTCTACTTCTCTGTATCTCATCAAGAAGATGACC
7049 GCTTCATTGTTTTAA
194 GCTTCATTGTTTTAA
* * ** *
7064 TCCACTTTTCTTTATCTCATCAGGAAGACGGATTTGG-TCTACTTCTCTATATCCCATCAGGAAG
1 TCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTTC-ACTTCTCTGCATCTCATCAGGAAG
* * * * * *
7128 ATTATCACTTTATTTCTTTGACCCACTTCTCTGTATCTTATCAAGAAGATGGGGTTTGAAAGTTT
65 ATGACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCAT-AAGAAGATGAGGTTTAAAAGTTT
* * *
7193 CACTCACATTGAGCTTCGCTTTACTGAATTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACC
129 CACTCACATTGAGCTTCGCTTCACTGAATTAGTCTACTTCTCTGTATCTCATCAAGAAGATGACC
7258 GCTTCATTGTTTTAA
194 GCTTCATTGTTTTAA
* * * *
7273 TCCACTTCTCTGTACCTCATCAGGAAGAAGGATTTGGTTCAATTCTCTGCATCTCGTCAGGAAGA
1 TCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTGCATCTCATCAGGAAGA
* * * **
7338 TGACCACTTTATTGCTTCGACCCACTTCTCTGTATCTCATCAGGAAGATGAAGTTTCGAAGTTTC
66 TGACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCAT-AAGAAGATGAGGTTTAAAAGTTTC
* ** * * * * ** * *
7403 ACCCGTAATGAGCTTCTCATCATTGTTTTGGTCTGCTTCTCTGTATCTCATCAAGAAGATGACC
130 ACTCACATTGAGCTTCGCTTCACTGAATTAGTCTACTTCTCTGTATCTCATCAAGAAGATGACC
7467 TTTTGAAGTT
Statistics
Matches: 536, Mismatches: 68, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
207 1 0.00
208 2 0.00
209 524 0.98
210 9 0.02
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.37
Consensus pattern (208 bp):
TCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTGCATCTCATCAGGAAGA
TGACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCATAAGAAGATGAGGTTTAAAAGTTTCA
CTCACATTGAGCTTCGCTTCACTGAATTAGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGC
TTCATTGTTTTAA
Found at i:7165 original size:85 final size:85
Alignment explanation
Indices: 7015--7176 Score: 200
Period size: 85 Copynumber: 1.9 Consensus size: 85
7005 CACTGAATTA
* * * * * *
7015 GTCTACTTCTCTGTATCTCATCAAGAAGATGATCGCTTCATTGTTTTAATCCACTTTTCTTTATC
1 GTCTACTTCTCTATATCCCATCAAGAAGATGATCACTTCATTGTTTTAACCCACTTCTCTGTATC
*
7080 TCATCAGGAAGACGGATTTG
66 TCATCAAGAAGACGGATTTG
* * * *
7100 GTCTACTTCTCTATATCCCATCAGGAAGATTATCACTTTATT-TCTTTGACCCACTTCTCTGTAT
1 GTCTACTTCTCTATATCCCATCAAGAAGATGATCACTTCATTGT-TTTAACCCACTTCTCTGTAT
*
7164 CTTATCAAGAAGA
65 CTCATCAAGAAGA
7177 TGGGGTTTGA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
84 1 0.02
85 63 0.98
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.40
Consensus pattern (85 bp):
GTCTACTTCTCTATATCCCATCAAGAAGATGATCACTTCATTGTTTTAACCCACTTCTCTGTATC
TCATCAAGAAGACGGATTTG
Found at i:7673 original size:40 final size:40
Alignment explanation
Indices: 7592--7712 Score: 136
Period size: 41 Copynumber: 3.0 Consensus size: 40
7582 GATCAGATGT
* * * * *
7592 TTCAATCTGCCCTTTTTTG-TTAGGAGTAAAAAACTGAAATC
1 TTCAATCTGCCC--TCTTGATTAGGGGTAAAATATTGGAATC
7633 TTCAATCTGCCCTCTTGATTAGGGGTAAAATATTGGAATC
1 TTCAATCTGCCCTCTTGATTAGGGGTAAAATATTGGAATC
* * *
7673 TTCAATTTGCTCCTCTTGACTAGGGGTAAAATATTAGAAT
1 TTCAATCTGC-CCTCTTGATTAGGGGTAAAATATTGGAAT
7713 GACCGTAGTT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.06
40 27 0.39
41 39 0.56
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (40 bp):
TTCAATCTGCCCTCTTGATTAGGGGTAAAATATTGGAATC
Found at i:8987 original size:9 final size:8
Alignment explanation
Indices: 8968--9007 Score: 53
Period size: 8 Copynumber: 4.6 Consensus size: 8
8958 TCTCTTTTTC
8968 TTTTTCCT
1 TTTTTCCT
8976 TTTTTCCT
1 TTTTTCCT
8984 TTTTTCTCTT
1 TTTTTC-C-T
8994 TTTTTCCT
1 TTTTTCCT
9002 CTTTTT
1 -TTTTT
9008 TTTATTTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 15 0.52
9 7 0.24
10 7 0.24
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTCCT
Found at i:9015 original size:26 final size:24
Alignment explanation
Indices: 8968--9021 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 24
8958 TCTCTTTTTC
8968 TTTTTCCTTTTTTCCTTTTTTCTCTT
1 TTTTTCCTTTTTT-CTTTTTTCT-TT
8994 TTTTTCCTCTTTTT-TTTATTTCTTT
1 TTTTTCCT-TTTTTCTTT-TTTCTTT
9019 TTT
1 TTT
9022 ATTTAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 8 0.31
26 13 0.50
27 5 0.19
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTTCCTTTTTTCTTTTTTCTTT
Found at i:14604 original size:30 final size:29
Alignment explanation
Indices: 14565--14897 Score: 210
Period size: 30 Copynumber: 11.3 Consensus size: 29
14555 AAAGAATTTG
*
14565 GGGTTAAAATGTGATTTTGGAAATGTTTAA
1 GGGTTAAAATGTGATTTTGGAAAAGTTT-A
* * *
14595 GGGTAAAAATGTGGTTTT-GAAAAGGTTTGG
1 GGGTTAAAATGTGATTTTGGAAAA-GTTT-A
* * ** *
14625 GGGTCAAAACGTGATTTTGGGGAAGTTTG
1 GGGTTAAAATGTGATTTTGGAAAAGTTTA
* *
14654 GGGTTAAAATATGGTTTTGGAAAAGTTTA
1 GGGTTAAAATGTGATTTTGGAAAAGTTTA
** *
14683 GGGGTTAAAATGCAATTTTAGAAAAGTTTA
1 -GGGTTAAAATGTGATTTTGGAAAAGTTTA
* ** *
14713 GGGCTCAAAATGCAATTTT-TAATAAGTTT-
1 GGG-TTAAAATGTGATTTTGGAA-AAGTTTA
* **
14742 GGGTCAAAATGCAATTTTGGAAAAGTTT-
1 GGGTTAAAATGTGATTTTGGAAAAGTTTA
* * *
14770 GGGGTGAAATGTGACTTTGGAAAAGTTT-
1 GGGTTAAAATGTGATTTTGGAAAAGTTTA
* * * *
14798 GAGGTGAAAATGTGACTTCGAAAAAGTTTA
1 G-GGTTAAAATGTGATTTTGGAAAAGTTTA
* * **
14828 GGGTGAAAATAT-ATTTTTAAAAAAGTTTTA
1 GGGTTAAAATGTGA-TTTTGGAAAAG-TTTA
* * * *
14858 GGGTGAAAATATAATTTTGGAAAGGTTTGA
1 GGGTTAAAATGTGATTTTGGAAAAGTTT-A
14888 GGGTTAAAAT
1 GGGTTAAAAT
14898 ATAGTTTTTA
Statistics
Matches: 247, Mismatches: 44, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
28 45 0.18
29 80 0.32
30 118 0.48
31 4 0.02
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (29 bp):
GGGTTAAAATGTGATTTTGGAAAAGTTTA
Found at i:14624 original size:59 final size:59
Alignment explanation
Indices: 14564--14712 Score: 158
Period size: 59 Copynumber: 2.5 Consensus size: 59
14554 TAAAGAATTT
* *
14564 GGGGTTAAAATGTGATTTTGGAAATGTTTAAGGGTAAAAATGTGGTTTT-GAAAAGGTTTG
1 GGGGTTAAAATGTGATTTTGGAAA-GTTTAAGGGTAAAAATATGGTTTTGGAAAA-GTTTA
* * * * *
14624 GGGGTCAAAACGTGATTTTGGGGAAGTTT-GGGGTTAAAATATGGTTTTGGAAAAGTTTA
1 GGGGTTAAAATGTGATTTT-GGAAAGTTTAAGGGTAAAAATATGGTTTTGGAAAAGTTTA
** *
14683 GGGGTTAAAATGCAATTTTAGAAAAGTTTA
1 GGGGTTAAAATGTGATTTT-GGAAAGTTTA
14713 GGGCTCAAAA
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
59 42 0.58
60 26 0.36
61 4 0.06
ACGTcount: A:0.32, C:0.02, G:0.31, T:0.35
Consensus pattern (59 bp):
GGGGTTAAAATGTGATTTTGGAAAGTTTAAGGGTAAAAATATGGTTTTGGAAAAGTTTA
Found at i:14740 original size:89 final size:87
Alignment explanation
Indices: 14535--14774 Score: 227
Period size: 89 Copynumber: 2.7 Consensus size: 87
14525 AATCAAAAAA
* * * *
14535 AGGGGTCAAAATGAAGTTTTAAAGAATTTGGGGTTAAAATGTGATTTTGGAAATGTTTAAGGGTA
1 AGGGGTCAAAATGAATTTTTAAA-AGTTTGGGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTA
***
14600 AAAATGTGGTTTTGAAAAGGTTT
65 AAAATGCAATTTTGAAAAGGTTT
* *** * *
14623 GGGGGTCAAAACGTG-ATTTTGGGGAAGTTTGGGGTTAAAATATGGTTTTGGAAAAGTTTAGGGG
1 AGGGGTCAAAA--TGAATTTT-TAAAAGTTTGGGGTTAAAATGTGATTTTGGAAAAGTTTAGGGG
*
14687 TTAAAATGCAATTTTAGAAAA-GTTT
63 TAAAAATGCAATTTT-GAAAAGGTTT
* * **
14712 AGGGCTCAAAATGCAATTTTTAATAAGTTT-GGGTCAAAATGCAATTTTGGAAAAGTTT-GGGGT
1 AGGGGTCAAAATG-AATTTTTAA-AAGTTTGGGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGT
14775 GAAATGTGAC
Statistics
Matches: 121, Mismatches: 24, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
87 7 0.06
88 33 0.27
89 73 0.60
90 8 0.07
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (87 bp):
AGGGGTCAAAATGAATTTTTAAAAGTTTGGGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTAA
AAATGCAATTTTGAAAAGGTTT
Found at i:14822 original size:29 final size:29
Alignment explanation
Indices: 14762--14837 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
14752 GCAATTTTGG
* * *
14762 AAAAGTTTGGGGTG-AAATGTGACTTTGG
1 AAAAGTTTGAGGTGAAAATGTGACTTCGA
14790 AAAAGTTTGAGGTGAAAATGTGACTTCGA
1 AAAAGTTTGAGGTGAAAATGTGACTTCGA
14819 AAAAGTTT-AGGGTGAAAAT
1 AAAAGTTTGA-GGTGAAAAT
14838 ATATTTTTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 14 0.33
29 29 0.67
ACGTcount: A:0.37, C:0.04, G:0.30, T:0.29
Consensus pattern (29 bp):
AAAAGTTTGAGGTGAAAATGTGACTTCGA
Found at i:14850 original size:29 final size:29
Alignment explanation
Indices: 14818--14909 Score: 112
Period size: 30 Copynumber: 3.1 Consensus size: 29
14808 TGTGACTTCG
14818 AAAAAGTTTAGGGTGAAAATATATTTTTA
1 AAAAAGTTTAGGGTGAAAATATATTTTTA
* *
14847 AAAAAGTTTTAGGGTGAAAATATAATTTTG
1 AAAAAG-TTTAGGGTGAAAATATATTTTTA
* * *
14877 GAAAGGTTTGAGGGTTAAAATATAGTTTTTA
1 AAAAAGTTT-AGGGTGAAAATATA-TTTTTA
14908 AA
1 AA
14910 TAAAATAGGG
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
29 9 0.17
30 38 0.73
31 5 0.10
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (29 bp):
AAAAAGTTTAGGGTGAAAATATATTTTTA
Found at i:15915 original size:21 final size:21
Alignment explanation
Indices: 15874--15918 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
15864 ATGTTTAGAA
*
15874 ATAATAAATGACATTAATAAT
1 ATAATAAATGAAATTAATAAT
*
15895 ATAATAAAT-AAATATATTAAT
1 ATAATAAATGAAAT-TAATAAT
15916 ATA
1 ATA
15919 TTTAAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
ATAATAAATGAAATTAATAAT
Found at i:15930 original size:25 final size:25
Alignment explanation
Indices: 15867--15931 Score: 62
Period size: 25 Copynumber: 2.5 Consensus size: 25
15857 TGAATGCATG
15867 TTTAGAAATAATAAATGACATTAATAA
1 TTTA-AAAT-ATAAATGACATTAATAA
* *
15894 TATAATAA-ATAAAT-ATATTAATATA
1 TTTAA-AATATAAATGACATTAATA-A
15919 TTTAAAATATAAA
1 TTTAAAATATAAA
15932 CAGTTTTGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
24 10 0.31
25 16 0.50
26 1 0.03
27 5 0.16
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (25 bp):
TTTAAAATATAAATGACATTAATAA
Found at i:18508 original size:30 final size:33
Alignment explanation
Indices: 18439--18511 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 33
18429 TGATTTATTT
*
18439 ATTTTTAAT-TATTTTATTTTATTTCATAATATT
1 ATTTTTAATGTATTTTATTTTA-TTCATAATATG
* *
18472 AATTTTAATGT-TTTTA-TTTA-TCGTAATATG
1 ATTTTTAATGTATTTTATTTTATTCATAATATG
18502 ATTTTTAATG
1 ATTTTTAATG
18512 ATTACTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 17 0.49
32 4 0.11
33 13 0.37
34 1 0.03
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (33 bp):
ATTTTTAATGTATTTTATTTTATTCATAATATG
Found at i:25308 original size:64 final size:64
Alignment explanation
Indices: 25207--25334 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
25197 CAAGGTTATG
25207 TAGAATAAACACTTCCCCATTTACAGTTTCCATCTCTTGATAACAAACTCAGGGTAAAACACAT
1 TAGAATAAACACTTCCCCATTTACAGTTTCCATCTCTTGATAACAAACTCAGGGTAAAACACAT
* *
25271 TAGAATAAACACTTCCCCATTTACAGTTTCCATCTCTTGGTAACAAACTCCGGGTAAAACACAT
1 TAGAATAAACACTTCCCCATTTACAGTTTCCATCTCTTGATAACAAACTCAGGGTAAAACACAT
25335 AGTTATAAGA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (64 bp):
TAGAATAAACACTTCCCCATTTACAGTTTCCATCTCTTGATAACAAACTCAGGGTAAAACACAT
Done.