Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003090.1 Kokia drynarioides strain JFW-HI SEQ_115644, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1730
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33


Found at i:1303 original size:26 final size:26

Alignment explanation


    Indices: 1267--1317  Score: 93
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1257 CCCAAAATAC

                 *                    
       1267 ATAGTTTATAAAAAGTCAGATTCGAG
          1 ATAGTCTATAAAAAGTCAGATTCGAG

                                     
       1293 ATAGTCTATAAAAAGTCAGATTCGA
          1 ATAGTCTATAAAAAGTCAGATTCGA

       1318 AATATCAAGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.43, C:0.10, G:0.18, T:0.29


Consensus pattern (26 bp):   
ATAGTCTATAAAAAGTCAGATTCGAG
Done.