Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003091.1 Kokia drynarioides strain JFW-HI SEQ_115651, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1733
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38


Found at i:94 original size:34 final size:35

Alignment explanation


    Indices: 18--95  Score: 88
    Period size: 36  Copynumber: 2.2  Consensus size: 35

          8 TTATATCTAT

                       *                 *      
         18 TATTTATATTATTAAATTAAATTTAACATTTTGTAA
          1 TATTTATATTACTAAATT-AATTTAACATATTGTAA

                         *                      
         54 TATTTATATTACTGAATT-ATTTAATCATATTG-AA
          1 TATTTATATTACTAAATTAATTTAA-CATATTGTAA

             *      
         88 TCTTTATA
          1 TATTTATA

         96 AATTTCTATC


Statistics
Matches: 37,  Mismatches: 4, Indels: 4
        0.82            0.09        0.09

Matches are distributed among these distances:
  34   15  0.41
  35    6  0.16
  36   16  0.43

ACGTcount: A:0.38, C:0.05, G:0.04, T:0.53


Consensus pattern (35 bp):   
TATTTATATTACTAAATTAATTTAACATATTGTAA
Done.