Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003099.1 Kokia drynarioides strain JFW-HI SEQ_115666, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9607
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33


Found at i:5225 original size:18 final size:18

Alignment explanation


    Indices: 5204--5255  Score: 50
    Period size: 18  Copynumber: 2.9  Consensus size: 18

       5194 TCTGGTTATA

                          **  
       5204 TGATTGCATATGATTTTG
          1 TGATTGCATATGATCATG

                *    *  *     
       5222 TGATCGCATCTGGTCATG
          1 TGATTGCATATGATCATG

                       *    
       5240 TGATTGCATATTATCA
          1 TGATTGCATATGATCA

       5256 GGTTGCGTAT


Statistics
Matches: 25,  Mismatches: 9, Indels: 0
        0.74            0.26        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.23, C:0.13, G:0.21, T:0.42


Consensus pattern (18 bp):   
TGATTGCATATGATCATG

Found at i:6932 original size:24 final size:24

Alignment explanation


    Indices: 6884--6930  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       6874 AATAGTTAAT

                                    
       6884 TTGTCAAGGCAAATATAAAATAAA
          1 TTGTCAAGGCAAATATAAAATAAA

                               *     
       6908 TTGTC-AGAGCAAAT-TAAGATAAA
          1 TTGTCAAG-GCAAATATAAAATAAA

       6931 ATGAATAGTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  23   10  0.48
  24   11  0.52

ACGTcount: A:0.51, C:0.09, G:0.15, T:0.26


Consensus pattern (24 bp):   
TTGTCAAGGCAAATATAAAATAAA
Done.