Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003114.1 Kokia drynarioides strain JFW-HI SEQ_115686, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1988
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41


Found at i:353 original size:14 final size:13

Alignment explanation


    Indices: 327--351  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        317 GCAGTGGTTT

                         
        327 TTTTTTTCTTTTC
          1 TTTTTTTCTTTTC

                        
        340 TTTTTTTCTTTT
          1 TTTTTTTCTTTT

        352 TCCATTTTAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (13 bp):   
TTTTTTTCTTTTC

Found at i:738 original size:18 final size:17

Alignment explanation


    Indices: 695--740  Score: 56
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        685 ATCTAATTCT

                             
        695 AAATAAAAATTATAAAA
          1 AAATAAAAATTATAAAA

                *        **  
        712 AAATCAAAATTATTTAA
          1 AAATAAAAATTATAAAA

                        
        729 AAATAGAAAATT
          1 AAATA-AAAATT

        741 CTAGGAAAAA


Statistics
Matches: 24,  Mismatches: 4, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  17   18  0.75
  18    6  0.25

ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28


Consensus pattern (17 bp):   
AAATAAAAATTATAAAA
Done.