Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003125.1 Kokia drynarioides strain JFW-HI SEQ_115699, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26785
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:955 original size:18 final size:19

Alignment explanation


    Indices: 932--973  Score: 77
    Period size: 18  Copynumber: 2.3  Consensus size: 19

        922 GGAGATTGGA

                               
        932 GAAAGTTAAGACAAGTTT-
          1 GAAAGTTAAGACAAGTTTG

                               
        950 GAAAGTTAAGACAAGTTTG
          1 GAAAGTTAAGACAAGTTTG

                 
        969 GAAAG
          1 GAAAG

        974 CTGATGATGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  18   18  0.78
  19    5  0.22

ACGTcount: A:0.45, C:0.05, G:0.26, T:0.24


Consensus pattern (19 bp):   
GAAAGTTAAGACAAGTTTG

Found at i:13341 original size:19 final size:18

Alignment explanation


    Indices: 13317--13368  Score: 56
    Period size: 15  Copynumber: 3.0  Consensus size: 18

      13307 ACTTCTTATC

                              
      13317 TGTTAAATATTATTAAAA
          1 TGTTAAATATTATTAAAA

                             * 
      13335 TTGTTAAA-ATT-TT-ATA
          1 -TGTTAAATATTATTAAAA

                     *        
      13351 TGTTAAATACTATTAAAA
          1 TGTTAAATATTATTAAAA

      13369 ATACTTATAA


Statistics
Matches: 27,  Mismatches: 3, Indels: 7
        0.73            0.08        0.19

Matches are distributed among these distances:
  15    7  0.26
  16    4  0.15
  17    4  0.15
  18    5  0.19
  19    7  0.26

ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46


Consensus pattern (18 bp):   
TGTTAAATATTATTAAAA
Done.