Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003134.1 Kokia drynarioides strain JFW-HI SEQ_115713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1242
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:1232 original size:23 final size:22

Alignment explanation


    Indices: 1181--1233  Score: 54
    Period size: 23  Copynumber: 2.3  Consensus size: 22

       1171 TAATTTTGTA

                              *   
       1181 TAATTTTATTAATTTTAATTTT
          1 TAATTTTATTAATTTTAAATTT

              *                      
       1203 TGTATTTT-TTGAATTTTAAAATTT
          1 T-AATTTTATT-AATTTT-AAATTT

                   
       1227 TAATTTT
          1 TAATTTT

       1234 GATTCAACT


Statistics
Matches: 25,  Mismatches: 3, Indels: 5
        0.76            0.09        0.15

Matches are distributed among these distances:
  22    3  0.12
  23   16  0.64
  24    6  0.24

ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66


Consensus pattern (22 bp):   
TAATTTTATTAATTTTAAATTT
Done.