Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003136.1 Kokia drynarioides strain JFW-HI SEQ_115715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1151
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.33


Found at i:1063 original size:5 final size:5

Alignment explanation


    Indices: 1053--1099  Score: 51
    Period size: 5  Copynumber: 9.4  Consensus size: 5

       1043 ATGATGTGTA

                              *          *                   *       
       1053 AATAT AATAT AATA- GATAT AATTAA AATAT AATAT AATAT GATAT AA
          1 AATAT AATAT AATAT AATAT AA-TAT AATAT AATAT AATAT AATAT AA

       1100 GCAAATAATG


Statistics
Matches: 34,  Mismatches: 6, Indels: 4
        0.77            0.14        0.09

Matches are distributed among these distances:
   4    3  0.09
   5   27  0.79
   6    4  0.12

ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36


Consensus pattern (5 bp):   
AATAT
Done.