Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003139.1 Kokia drynarioides strain JFW-HI SEQ_115718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1883
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.32


Found at i:1350 original size:6 final size:6

Alignment explanation


    Indices: 1339--1365  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       1329 TGATCAAAAT

                                           
       1339 TGAAAG TGAAAG TGAAAG TGAAAG TGA
          1 TGAAAG TGAAAG TGAAAG TGAAAG TGA

       1366 GATTGGAATT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.48, C:0.00, G:0.33, T:0.19


Consensus pattern (6 bp):   
TGAAAG

Found at i:1378 original size:18 final size:18

Alignment explanation


    Indices: 1335--1383  Score: 62
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       1325 TTTGTGATCA

                              
       1335 AAATTGAAAGTGAAAGTG
          1 AAATTGAAAGTGAAAGTG

               *         * *  
       1353 AAAGTGAAAGTGAGATTG
          1 AAATTGAAAGTGAAAGTG

            *            
       1371 GAATTGAAAGTGA
          1 AAATTGAAAGTGA

       1384 TATGAATTAT


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  18   26  1.00

ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22


Consensus pattern (18 bp):   
AAATTGAAAGTGAAAGTG
Done.