Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003140.1 Kokia drynarioides strain JFW-HI SEQ_115720, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1822
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:1655 original size:21 final size:23

Alignment explanation


    Indices: 1615--1656  Score: 61
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       1605 AATAAATTAG

                *                  
       1615 CAGCTAATATGCTTGATTTTCGA
          1 CAGCAAATATGCTTGATTTTCGA

                                 
       1638 CAGCAAAT-TGCTT-ATTTTC
          1 CAGCAAATATGCTTGATTTTC

       1657 AAAAGTAAAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21    6  0.33
  22    5  0.28
  23    7  0.39

ACGTcount: A:0.26, C:0.19, G:0.14, T:0.40


Consensus pattern (23 bp):   
CAGCAAATATGCTTGATTTTCGA
Done.