Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003142.1 Kokia drynarioides strain JFW-HI SEQ_115724, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18909
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:13136 original size:11 final size:11

Alignment explanation


    Indices: 13122--13156  Score: 54
    Period size: 11  Copynumber: 3.2  Consensus size: 11

      13112 GAAAATACGT

                       
      13122 GGAAAAGGAAA
          1 GGAAAAGGAAA

                        
      13133 GGAATAAGG-AA
          1 GGAA-AAGGAAA

                       
      13144 GGAAAAGGAAA
          1 GGAAAAGGAAA

              
      13155 GG
          1 GG

      13157 TAATTCACCT


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  10    4  0.18
  11   14  0.64
  12    4  0.18

ACGTcount: A:0.57, C:0.00, G:0.40, T:0.03


Consensus pattern (11 bp):   
GGAAAAGGAAA
Done.