Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003143.1 Kokia drynarioides strain JFW-HI SEQ_115725, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3536
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.33


Found at i:1682 original size:21 final size:21

Alignment explanation


    Indices: 1627--1684  Score: 62
    Period size: 21  Copynumber: 2.8  Consensus size: 21

       1617 AATAGTGTAG

                            *    
       1627 ACTTTTACCGATACAACTGAC
          1 ACTTTTACCGATACAAATGAC

             *  *  * *           
       1648 AGTTCTATCTATACAAATGAC
          1 ACTTTTACCGATACAAATGAC

            *               
       1669 TCTTTTACCGATACAA
          1 ACTTTTACCGATACAA

       1685 GTCTTATTTC


Statistics
Matches: 27,  Mismatches: 10, Indels: 0
        0.73            0.27        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.34, C:0.24, G:0.09, T:0.33


Consensus pattern (21 bp):   
ACTTTTACCGATACAAATGAC
Done.