Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003150.1 Kokia drynarioides strain JFW-HI SEQ_115736, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1008
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36


Found at i:272 original size:150 final size:150

Alignment explanation


    Indices: 1--302  Score: 532
    Period size: 150  Copynumber: 2.0  Consensus size: 150

                                                                             
          1 TAAGCTCACCCACGCCCTTTTTAACCATTACAGATTCTTAGTGTCGGTGTGAGTGGTATGGTCTT
          1 TAAGCTCACCCACGCCCTTTTTAACCATTACAGATTCTTAGTGTCGGTGTGAGTGGTATGGTCTT

              *                             *                                
         66 GAGGGTGATCCAAGTCAAGTAAACCATTTACTTTTTATTAGTAGGTTTAATAAACTATTTATGTT
         66 GAAGGTGATCCAAGTCAAGTAAACCATTTACTCTTTATTAGTAGGTTTAATAAACTATTTATGTT

             *          *       
        131 GGGAACCTAAGGTAATGTGT
        131 GAGAACCTAAGGCAATGTGT

                      *                                              *       
        151 TAAGCTCACCTACGCCCTTTTTAACCATTACAGATTCTTAGTGTCGGTGTGAGTGGTGTGGTCTT
          1 TAAGCTCACCCACGCCCTTTTTAACCATTACAGATTCTTAGTGTCGGTGTGAGTGGTATGGTCTT

                                *                                            
        216 GAAGGTGATCCAAGTCAAGTCAACCATTTACTCTTTATTAGTAGGTTTAATAAACTATTTATGTT
         66 GAAGGTGATCCAAGTCAAGTAAACCATTTACTCTTTATTAGTAGGTTTAATAAACTATTTATGTT

                  *             
        281 GAGAACTTAAGGCAATGTGT
        131 GAGAACCTAAGGCAATGTGT

              
        301 TA
          1 TA

        303 GGCAAAATGG


Statistics
Matches: 144,  Mismatches: 8, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 150  144  1.00

ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36


Consensus pattern (150 bp):   
TAAGCTCACCCACGCCCTTTTTAACCATTACAGATTCTTAGTGTCGGTGTGAGTGGTATGGTCTT
GAAGGTGATCCAAGTCAAGTAAACCATTTACTCTTTATTAGTAGGTTTAATAAACTATTTATGTT
GAGAACCTAAGGCAATGTGT
Done.