Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003152.1 Kokia drynarioides strain JFW-HI SEQ_115738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66443
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 101 characters in sequence are not A, C, G, or T
Found at i:2184 original size:38 final size:38
Alignment explanation
Indices: 2138--2213 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
2128 GAGTTATTTG
2138 ATCAGTTAAAAGGTGCAACTGTATTTTGTAAAATTGAT
1 ATCAGTTAAAAGGTGCAACTGTATTTTGTAAAATTGAT
2176 ATCAGTTAAAAGGTGCAACTGTATTTTGTAAAATTGAT
1 ATCAGTTAAAAGGTGCAACTGTATTTTGTAAAATTGAT
2214 CTTCAGTCAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (38 bp):
ATCAGTTAAAAGGTGCAACTGTATTTTGTAAAATTGAT
Found at i:6671 original size:21 final size:22
Alignment explanation
Indices: 6618--6672 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
6608 CTGGAGTTTT
**
6618 TTGTATCGGTAG-ATGCATGAC
1 TTGTATCGGTAGAAACCATGAC
* *
6639 TTGTACCAGTAGAAACCAT-AC
1 TTGTATCGGTAGAAACCATGAC
6660 TTGTATCGGTAGA
1 TTGTATCGGTAGA
6673 TCTAGCACAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (22 bp):
TTGTATCGGTAGAAACCATGAC
Found at i:9006 original size:42 final size:42
Alignment explanation
Indices: 8935--9080 Score: 220
Period size: 42 Copynumber: 3.5 Consensus size: 42
8925 TGATTTATAA
* *
8935 AAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGATT
1 AAAGGAAGACTCATGTCTCGAGATGAGAATGAGAATATGATT
* * *
8977 AAAGGAAGACTCATGTTTCAAGATAAGAATGAGAATATGATT
1 AAAGGAAGACTCATGTCTCGAGATGAGAATGAGAATATGATT
*
9019 AAAGAAAGACTCATGTCTCGAGATGAGAATGAGAATATGATT
1 AAAGGAAGACTCATGTCTCGAGATGAGAATGAGAATATGATT
* *
9061 AAAGGAAGACTTATGACTCG
1 AAAGGAAGACTCATGTCTCG
9081 TCAAAGCATA
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 92 1.00
ACGTcount: A:0.41, C:0.10, G:0.25, T:0.25
Consensus pattern (42 bp):
AAAGGAAGACTCATGTCTCGAGATGAGAATGAGAATATGATT
Found at i:17622 original size:18 final size:18
Alignment explanation
Indices: 17588--17622 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
17578 AGTTACAAGA
**
17588 AGATGAAAGGTTTAAGGG
1 AGATGAAAGGTGAAAGGG
17606 AGATGAAAGGTGAAAGG
1 AGATGAAAGGTGAAAGG
17623 TTGAAGAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (18 bp):
AGATGAAAGGTGAAAGGG
Found at i:17644 original size:25 final size:25
Alignment explanation
Indices: 17591--17637 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
17581 TACAAGAAGA
* *
17591 TGAAAGGTTTAAGGGAGATGAAAGG
1 TGAAAGGTTGAAGGAAGATGAAAGG
17616 TGAAAGGTTGAA-GAAGATGAAA
1 TGAAAGGTTGAAGGAAGATGAAA
17638 TGTTGAACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.19
Consensus pattern (25 bp):
TGAAAGGTTGAAGGAAGATGAAAGG
Found at i:17824 original size:14 final size:13
Alignment explanation
Indices: 17807--17854 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
17797 GAATTAAGGA
17807 TTTAAGATTTAGGG
1 TTTAAGATTT-GGG
*
17821 TTTAAGAGTTTGAGA
1 TTTAAGA-TTTG-GG
*
17836 TTTAGGATTTGGG
1 TTTAAGATTTGGG
17849 TTTAAG
1 TTTAAG
17855 GTCTAAAGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 6 0.21
14 12 0.43
15 10 0.36
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (13 bp):
TTTAAGATTTGGG
Found at i:22806 original size:3 final size:3
Alignment explanation
Indices: 22800--22829 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
22790 CAGATTCATG
22800 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
22830 GGGTCGTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:33316 original size:13 final size:12
Alignment explanation
Indices: 33292--33345 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 12
33282 AGATTGAATC
33292 TAAATA-TAAAA
1 TAAATACTAAAA
33303 TAAATAACTAAAA
1 TAAAT-ACTAAAA
33316 TTCAAATA--AAAA
1 -T-AAATACTAAAA
33328 TAAATACTAGAAA
1 TAAATACTA-AAA
33341 TAAAT
1 TAAAT
33346 TGAGCGCAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
10 5 0.14
11 6 0.17
12 6 0.17
13 13 0.36
14 2 0.06
15 4 0.11
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.26
Consensus pattern (12 bp):
TAAATACTAAAA
Found at i:33336 original size:24 final size:27
Alignment explanation
Indices: 33293--33341 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
33283 GATTGAATCT
33293 AAATATAAAATAAATAACTA-AAATTC
1 AAATATAAAATAAATAACTAGAAATTC
33319 AAATA-AAAATAAAT-ACTAGAAAT
1 AAATATAAAATAAATAACTAGAAAT
33342 AAATTGAGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.18
25 13 0.59
26 5 0.23
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.24
Consensus pattern (27 bp):
AAATATAAAATAAATAACTAGAAATTC
Found at i:34015 original size:51 final size:51
Alignment explanation
Indices: 33932--34044 Score: 163
Period size: 51 Copynumber: 2.2 Consensus size: 51
33922 CTGACAATTT
* *
33932 TAATATTGAATTAATTATTGACATAAAACTAAAATAAATATTTAACTACTCA
1 TAAT-TTGAATTAATTATCGACATAAAACTAAAACAAATATTTAACTACTCA
* * *
33984 TAATTTGAATTAATTATCGACCTAAAGCTAAAACAGATATTTAACTACTCA
1 TAATTTGAATTAATTATCGACATAAAACTAAAACAAATATTTAACTACTCA
*
34035 TAATTGGAAT
1 TAATTTGAAT
34045 AAAAAACAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
51 51 0.93
52 4 0.07
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (51 bp):
TAATTTGAATTAATTATCGACATAAAACTAAAACAAATATTTAACTACTCA
Found at i:45338 original size:53 final size:53
Alignment explanation
Indices: 45273--45609 Score: 550
Period size: 53 Copynumber: 6.4 Consensus size: 53
45263 GGTTTGATAA
*
45273 CTATGTCATCATGAGTTATATGAATCCTATTTCGGATTAAAGGTCCGATGACT
1 CTATGTCATCGTGAGTTATATGAATCCTATTTCGGATTAAAGGTCCGATGACT
* * *
45326 CTGTGTCATCATGAGTTATATGAATCCTATTGCGGATTAAAGGTCCGATGACT
1 CTATGTCATCGTGAGTTATATGAATCCTATTTCGGATTAAAGGTCCGATGACT
* *
45379 CTATGTCATCGTGAGTTATATGAATCCTATTTTGAATTAAAGGTCCGATGACT
1 CTATGTCATCGTGAGTTATATGAATCCTATTTCGGATTAAAGGTCCGATGACT
**
45432 CTATGTCATTATGAGTTATATGAATCCTATTAT-GGATTAAAGGTCCGATGACT
1 CTATGTCATCGTGAGTTATATGAATCCTATT-TCGGATTAAAGGTCCGATGACT
*
45485 CTATGTCATCGTGAGTTATATGAATCCTATTTCGGATTAAAGGTCTGATGACT
1 CTATGTCATCGTGAGTTATATGAATCCTATTTCGGATTAAAGGTCCGATGACT
* * *
45538 CTGTGTCATTGTGAGTTATATGAATCCTATTACGGATTAAAGGTCCGATGACT
1 CTATGTCATCGTGAGTTATATGAATCCTATTTCGGATTAAAGGTCCGATGACT
45591 CTATGTCATCGTGAGTTAT
1 CTATGTCATCGTGAGTTAT
45610 CAAATGTGAA
Statistics
Matches: 263, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
52 1 0.00
53 261 0.99
54 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.37
Consensus pattern (53 bp):
CTATGTCATCGTGAGTTATATGAATCCTATTTCGGATTAAAGGTCCGATGACT
Found at i:51930 original size:18 final size:18
Alignment explanation
Indices: 51899--51934 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
51889 TTTAGATTCC
51899 AATTTAGTCCTTTTCATTT
1 AATTTAGTCCTTTT-ATTT
51918 AATTTAG-CCTTTTATTT
1 AATTTAGTCCTTTTATTT
51935 TCTTTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 6 0.35
19 7 0.41
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.58
Consensus pattern (18 bp):
AATTTAGTCCTTTTATTT
Found at i:52200 original size:18 final size:18
Alignment explanation
Indices: 52166--52212 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
52156 TTTTATCGTA
*
52166 TTATTGCTATTATTATTG
1 TTATTGTTATTATTATTG
*
52184 TTATTGTTA-TATATATTT
1 TTATTGTTATTAT-TATTG
*
52202 TTATTTTTATT
1 TTATTGTTATT
52213 GCTATCATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 3 0.12
18 20 0.83
19 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.68
Consensus pattern (18 bp):
TTATTGTTATTATTATTG
Found at i:52200 original size:24 final size:24
Alignment explanation
Indices: 52173--52230 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
52163 GTATTATTGC
*
52173 TATTATTATTGTTATTGTTAT-AT
1 TATTATTATTGTTATTGCTATCAT
* *
52196 ATATTTTTATTTTTATTGCTATCAT
1 -TATTATTATTGTTATTGCTATCAT
52221 T-TTATTATTG
1 TATTATTATTG
52231 CATTATTACT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 7 0.25
24 19 0.68
25 2 0.07
ACGTcount: A:0.24, C:0.03, G:0.07, T:0.66
Consensus pattern (24 bp):
TATTATTATTGTTATTGCTATCAT
Found at i:62395 original size:30 final size:31
Alignment explanation
Indices: 62338--62396 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
62328 GTTTTGGGCA
* *
62338 ATAATATTTTAAAATTTGTATCTAATTTTTT
1 ATAATATTTTAAAATTTATATCAAATTTTTT
62369 ATAA-ATTTTAAAATTATATAT-AAATTTT
1 ATAATATTTTAAAATT-TATATCAAATTTT
62397 AATTTTATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (31 bp):
ATAATATTTTAAAATTTATATCAAATTTTTT
Found at i:62400 original size:17 final size:15
Alignment explanation
Indices: 62365--62413 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 15
62355 GTATCTAATT
62365 TTTTATAAATTTTAAAA
1 TTTTATAAATTTT--AA
62382 TTATATATAAATTTTAA
1 TT-T-TATAAATTTTAA
62399 TTTTATGAAATTTTA
1 TTTTAT-AAATTTTA
62414 TGTATAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 3 0.10
16 9 0.31
17 6 0.21
18 1 0.03
19 10 0.34
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
TTTTATAAATTTTAA
Found at i:62404 original size:19 final size:18
Alignment explanation
Indices: 62360--62404 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
62350 AATTTGTATC
62360 TAATTTT-TTATAAATTT
1 TAATTTTATTATAAATTT
**
62377 TAAAATTATATATAAATTT
1 TAATTTTAT-TATAAATTT
62396 TAATTTTAT
1 TAATTTTAT
62405 GAAATTTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 5 0.23
18 1 0.05
19 16 0.73
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TAATTTTATTATAAATTT
Found at i:62523 original size:25 final size:25
Alignment explanation
Indices: 62487--62547 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
62477 TTTTATATTT
* *
62487 ATATATTAAATATACAAAT-AATTA
1 ATATATTTAATATAAAAATAAATTA
*
62511 TATTTATTTAATATAAAAATAAATTA
1 -ATATATTTAATATAAAAATAAATTA
62537 ATATATTTAAT
1 ATATATTTAAT
62548 TTTTTTGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 26 0.84
26 5 0.16
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
ATATATTTAATATAAAAATAAATTA
Found at i:62944 original size:21 final size:21
Alignment explanation
Indices: 62920--62962 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
62910 AATTTATTCA
62920 GGATAAGTGGAGTTTAAATGG
1 GGATAAGTGGAGTTTAAATGG
62941 GGATAAGTGGAGTTTAAATGG
1 GGATAAGTGGAGTTTAAATGG
62962 G
1 G
62963 TGTATGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.40, T:0.28
Consensus pattern (21 bp):
GGATAAGTGGAGTTTAAATGG
Found at i:64820 original size:29 final size:28
Alignment explanation
Indices: 64780--64838 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
64770 GAGACTTTGC
*
64780 GGATTCCTGGGGGCAAAAATGATAATTTT
1 GGATTCCTGGGGG-AAAAACGATAATTTT
**
64809 GGATT-CTCGGGGGTGAAACGATAATTTT
1 GGATTCCT-GGGGGAAAAACGATAATTTT
64837 GG
1 GG
64839 GAAAATTCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.27, C:0.10, G:0.32, T:0.31
Consensus pattern (28 bp):
GGATTCCTGGGGGAAAAACGATAATTTT
Found at i:64895 original size:58 final size:58
Alignment explanation
Indices: 64847--65278 Score: 606
Period size: 59 Copynumber: 7.4 Consensus size: 58
64837 GGGAAAATTC
* * *
64847 GAGGTCAAAAATGGGA-TTTTGAAAGTGT-GGGGTAAAATTAGAATTTTTGAAAGTTTT
1 GAGGTTAAAAATGGGATTTTTGGAAGT-TCGGGGTAAAAATAGAATTTTTGAAAGTTTT
* * * *
64904 G-GGGTAAAAATGAGATTTTTGGAAGTTTGGGGGTAAAAATAGAA-TTTTGGAAGTTTT
1 GAGGTTAAAAATGGGATTTTTGGAAG-TTCGGGGTAAAAATAGAATTTTTGAAAGTTTT
* * *
64961 GGGGTTAAAAATGGGATTTTTGGAAGTTTTGGGGTAAAAATAGAATTTTTGAAAGTTTC
1 GAGGTTAAAAATGGGATTTTTGGAAG-TTCGGGGTAAAAATAGAATTTTTGAAAGTTTT
* *
65020 GAGGTTAAAAACGGGATTTTTGGAAGTTCGAGGGTAAAAATAGAATTTTTGAAAGCTTT
1 GAGGTTAAAAATGGGATTTTTGGAAGTTCG-GGGTAAAAATAGAATTTTTGAAAGTTTT
*
65079 GAGGTTAAAAATGGGATTTTTGGAAGTTTGGGGGTAAAAATAGAATTTTTGAAAGTTTT
1 GAGGTTAAAAATGGGATTTTTGGAAG-TTCGGGGTAAAAATAGAATTTTTGAAAGTTTT
*
65138 -AGGGTTAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAAAGAGAA-TTTTGAAAGTTTT
1 GA-GGTTAAAAATGGGATTTTTGGAAGTTCG-GGGTAAAAATAGAATTTTTGAAAGTTTT
* *
65196 GGGGTTAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAAATAGAATTTTTGAAAGTTTC
1 GAGGTTAAAAATGGGATTTTTGGAAGTTCG-GGGTAAAAATAGAATTTTTGAAAGTTTT
65255 GAGGTTAAAAATGGGATTTTTGGA
1 GAGGTTAAAAATGGGATTTTTGGA
65279 TAATTTAGGG
Statistics
Matches: 339, Mismatches: 25, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
56 11 0.03
57 23 0.07
58 117 0.35
59 185 0.55
60 3 0.01
ACGTcount: A:0.34, C:0.02, G:0.29, T:0.35
Consensus pattern (58 bp):
GAGGTTAAAAATGGGATTTTTGGAAGTTCGGGGTAAAAATAGAATTTTTGAAAGTTTT
Found at i:64912 original size:29 final size:29
Alignment explanation
Indices: 64863--65276 Score: 374
Period size: 29 Copynumber: 14.2 Consensus size: 29
64853 AAAAATGGGA
* *
64863 TTTTGAAAG-TGTGGGGTAAAATTAGAAT
1 TTTTGAAAGTTTTGGGGTAAAAATAGAAT
64891 TTTTGAAAGTTTTGGGGTAAAAAT-GAGAT
1 TTTTGAAAGTTTTGGGGTAAAAATAGA-AT
* *
64920 TTTTGGAAGTTTGGGGGTAAAAATAGAA-
1 TTTTGAAAGTTTTGGGGTAAAAATAGAAT
* * *
64948 TTTTGGAAGTTTTGGGGTTAAAAATGGGAT
1 TTTTGAAAGTTTTGGGG-TAAAAATAGAAT
*
64978 TTTTGGAAGTTTTGGGGTAAAAATAGAAT
1 TTTTGAAAGTTTTGGGGTAAAAATAGAAT
* * ** *
65007 TTTTGAAAGTTTCGAGGTTAAAAACGGGAT
1 TTTTGAAAGTTTTG-GGGTAAAAATAGAAT
* *
65037 TTTTGGAAG-TTCGAGGGTAAAAATAGAAT
1 TTTTGAAAGTTTTG-GGGTAAAAATAGAAT
* * * *
65066 TTTTGAAAGCTTTGAGGTTAAAAATGGGAT
1 TTTTGAAAGTTTTG-GGGTAAAAATAGAAT
* *
65096 TTTTGGAAGTTTGGGGGTAAAAATAGAAT
1 TTTTGAAAGTTTTGGGGTAAAAATAGAAT
* * *
65125 TTTTGAAAGTTTTAGGGTTAAAAATGGGAT
1 TTTTGAAAGTTTT-GGGGTAAAAATAGAAT
* * *
65155 TTTTGGAAG-TTCGAGGGTAAAAAGAGAA-
1 TTTTGAAAGTTTTG-GGGTAAAAATAGAAT
* *
65183 TTTTGAAAGTTTTGGGGTTAAAAATGGGAT
1 TTTTGAAAGTTTTGGGG-TAAAAATAGAAT
* *
65213 TTTTGGAAG-TTCGAGGGTAAAAATAGAAT
1 TTTTGAAAGTTTTG-GGGTAAAAATAGAAT
* * * *
65242 TTTTGAAAGTTTCGAGGTTAAAAATGGGAT
1 TTTTGAAAGTTTTG-GGGTAAAAATAGAAT
65272 TTTTG
1 TTTTG
65277 GATAATTTAG
Statistics
Matches: 317, Mismatches: 55, Indels: 26
0.80 0.14 0.07
Matches are distributed among these distances:
28 39 0.12
29 159 0.50
30 119 0.38
ACGTcount: A:0.34, C:0.02, G:0.29, T:0.36
Consensus pattern (29 bp):
TTTTGAAAGTTTTGGGGTAAAAATAGAAT
Found at i:66325 original size:3 final size:3
Alignment explanation
Indices: 66317--66380 Score: 85
Period size: 3 Copynumber: 21.0 Consensus size: 3
66307 ATTTATTTAT
**
66317 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA ACA GTTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA -TTA
66363 TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
66381 ATATCATTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
2 2 0.04
3 49 0.89
4 4 0.07
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Done.