Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003158.1 Kokia drynarioides strain JFW-HI SEQ_115746, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:1104 original size:35 final size:35

Alignment explanation


    Indices: 1058--1133  Score: 136
    Period size: 35  Copynumber: 2.2  Consensus size: 35

       1048 CTTATGTTTG

                                      *        
       1058 GTTCATTTGGATAATTAGGAGCTCATTAATAATAA
          1 GTTCATTTGGATAATTAGGAGCTCATGAATAATAA

                                               
       1093 GTTCATTTGGATAATTAGGAGCTCATGAATAATAA
          1 GTTCATTTGGATAATTAGGAGCTCATGAATAATAA

                   
       1128 -TTCATT
          1 GTTCATT

       1134 GTTTTTTTTA


Statistics
Matches: 40,  Mismatches: 1, Indels: 1
        0.95            0.02        0.02

Matches are distributed among these distances:
  34    6  0.15
  35   34  0.85

ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38


Consensus pattern (35 bp):   
GTTCATTTGGATAATTAGGAGCTCATGAATAATAA

Found at i:1118 original size:20 final size:20

Alignment explanation


    Indices: 1060--1118  Score: 65
    Period size: 20  Copynumber: 3.2  Consensus size: 20

       1050 TATGTTTGGT

                                
       1060 TCATTTGGATAATTAGGAGC
          1 TCATTTGGATAATTAGGAGC

                   *           *
       1080 TCA-TT-AATAA-TA--AGT
          1 TCATTTGGATAATTAGGAGC

                                
       1095 TCATTTGGATAATTAGGAGC
          1 TCATTTGGATAATTAGGAGC

                
       1115 TCAT
          1 TCAT

       1119 GAATAATAAT


Statistics
Matches: 30,  Mismatches: 4, Indels: 10
        0.68            0.09        0.23

Matches are distributed among these distances:
  15    5  0.17
  16    2  0.07
  17    6  0.20
  18    6  0.20
  19    2  0.07
  20    9  0.30

ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37


Consensus pattern (20 bp):   
TCATTTGGATAATTAGGAGC
Done.