Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003159.1 Kokia drynarioides strain JFW-HI SEQ_115749, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1318
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.37


Found at i:131 original size:22 final size:22

Alignment explanation


    Indices: 104--165  Score: 97
    Period size: 22  Copynumber: 2.8  Consensus size: 22

         94 AACAGTAGGT

                                  
        104 ACACACAGTGCTGAACAGAAGC
          1 ACACACAGTGCTGAACAGAAGC

                        *  *      
        126 ACACACAGTGCTAAATAGAAGC
          1 ACACACAGTGCTGAACAGAAGC

                     *        
        148 ACACACAGTACTGAACAG
          1 ACACACAGTGCTGAACAG

        166 TAAGTGCTCT


Statistics
Matches: 35,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  22   35  1.00

ACGTcount: A:0.44, C:0.26, G:0.19, T:0.11


Consensus pattern (22 bp):   
ACACACAGTGCTGAACAGAAGC
Done.