Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003164.1 Kokia drynarioides strain JFW-HI SEQ_115759, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 843
Length: 1406
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Found at i:1329 original size:153 final size:153
Alignment explanation
Indices: 1037--1365 Score: 541
Period size: 153 Copynumber: 2.2 Consensus size: 153
1027 TAAAATGGTT
* * *
1037 AGCTTCATGATTAGATACTGAAAGGTGGACCAAATTCGTCTTCCTGATGAAATACAGAGAACCGA
1 AGCTTCCTGATGAGATACTGAGAGGTGGACCAAATTCGTCTTCCTGATGAAATACAGAGAACCGA
*
1102 ATTGATACAAGTGAGGCGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAACTCGAGGCTCA
66 ATTGAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAACTCGAGGCTCA
*
1167 ATGCAAGCAAATCTTCGAACCCT
131 ATGCAAGCAAATCTTCGAACCCC
* * *
1190 ATCTTCCTGATGAGATACTGAGAGGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
1 AGCTTCCTGATGAGATACTGAGAGGTGGACCAAATTCGTCTTCCTGATGAAATACAGAGAACCGA
* * * *
1255 ATTGAAACAAGTGAGGTGGTCATGTTCTTGATGAGATACAGAGAAGTATACCAACTCGAGGCTCA
66 ATTGAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAACTCGAGGCTCA
*
1320 ATGCGAGCAAATCTTCGAACCCC
131 ATGCAAGCAAATCTTCGAACCCC
1343 AGCTTCCTGATGAGATACTGAGA
1 AGCTTCCTGATGAGATACTGAGA
1366 AGCAGGTCAA
Statistics
Matches: 162, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
153 162 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (153 bp):
AGCTTCCTGATGAGATACTGAGAGGTGGACCAAATTCGTCTTCCTGATGAAATACAGAGAACCGA
ATTGAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACAAAGAAGTATACCAACTCGAGGCTCA
ATGCAAGCAAATCTTCGAACCCC
Done.