Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003165.1 Kokia drynarioides strain JFW-HI SEQ_115761, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5812
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:2359 original size:18 final size:18

Alignment explanation


    Indices: 2336--2429  Score: 109
    Period size: 18  Copynumber: 5.2  Consensus size: 18

       2326 TACGTGGACA

                  *           
       2336 TGGAACCCAATGTGAACT
          1 TGGAACACAATGTGAACT

                              
       2354 TGGAACACAATGTGAACT
          1 TGGAACACAATGTGAACT

                    *         
       2372 TGGAACACGATGTGAACT
          1 TGGAACACAATGTGAACT

                    *          
       2390 TGGAACACGATGT-AAGCT
          1 TGGAACACAATGTGAA-CT

               **     *  *    
       2408 TGGTTCACAACGTTAACT
          1 TGGAACACAATGTGAACT

                
       2426 TGGA
          1 TGGA

       2430 GCAGAACCTG


Statistics
Matches: 67,  Mismatches: 7, Indels: 4
        0.86            0.09        0.05

Matches are distributed among these distances:
  17    2  0.03
  18   63  0.94
  19    2  0.03

ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24


Consensus pattern (18 bp):   
TGGAACACAATGTGAACT

Done.