Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003178.1 Kokia drynarioides strain JFW-HI SEQ_115783, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1152
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30


Found at i:58 original size:14 final size:14

Alignment explanation


    Indices: 13--82  Score: 54
    Period size: 14  Copynumber: 5.1  Consensus size: 14

          3 ATTTTTATAC

                          
         13 AATTTTTATA-AAT
          1 AATTTTTATATAAT

            *   *   * *   
         26 TATTATTAGAAAAT
          1 AATTTTTATATAAT

            *        * *  
         40 TATTTTTATTTTAT
          1 AATTTTTATATAAT

                          
         54 AATTTTTATATAAT
          1 AATTTTTATATAAT

             *            
         68 ATTTTTTATA-AAT
          1 AATTTTTATATAAT

              
         81 AA
          1 AA

         83 ATTAAATAAT


Statistics
Matches: 43,  Mismatches: 13, Indels: 2
        0.74            0.22        0.03

Matches are distributed among these distances:
  13   11  0.26
  14   32  0.74

ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57


Consensus pattern (14 bp):   
AATTTTTATATAAT

Found at i:167 original size:12 final size:12

Alignment explanation


    Indices: 150--187  Score: 67
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        140 TGTAAATTAC

                        
        150 AATTGTTTAAAA
          1 AATTGTTTAAAA

                        
        162 AATTGTTTAAAA
          1 AATTGTTTAAAA

                *       
        174 AATTATTTAAAA
          1 AATTGTTTAAAA

              
        186 AA
          1 AA

        188 ATAAAATTTG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39


Consensus pattern (12 bp):   
AATTGTTTAAAA

Done.