Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000318.1 Kokia drynarioides strain JFW-HI SEQ_111081, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12535
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:6524 original size:6 final size:6

Alignment explanation


    Indices: 6516--6549  Score: 59
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       6506 ATTTGATTAG

                                                   
       6516 TTTCTGT TTTCTT TTTCTT TTTCTT TTTCTT TTT
          1 TTTCT-T TTTCTT TTTCTT TTTCTT TTTCTT TTT

       6550 GACACAGTAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6   22  0.81
   7    5  0.19

ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82


Consensus pattern (6 bp):   
TTTCTT

Done.