Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003191.1 Kokia drynarioides strain JFW-HI SEQ_115803, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1606
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32


Found at i:575 original size:2 final size:2

Alignment explanation


    Indices: 570--601  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

        560 TATATATATA

                                                           
        570 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG

        602 AAGTGATAAC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50


Consensus pattern (2 bp):   
TG

Done.