Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003200.1 Kokia drynarioides strain JFW-HI SEQ_115817, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 794

Length: 1324
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28


Found at i:1309 original size:216 final size:214

Alignment explanation


    Indices: 3--1324  Score: 1397
    Period size: 216  Copynumber: 6.1  Consensus size: 214

          1 AG

                              *         *               *              *     
          3 GGAACCGAAGTTAAAAAATAACTCGTAACAGTTTGACAAGTTCGGAAGTTCGTACAAAGGCAAAG
          1 GGAA-CGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAAG

                                                       *                     
         68 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCTAAACTTGTTTGCAAAATGACA
         65 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACA

                           *      *    *                 **                  
        133 AACTATTTAGACCAATTGATGCGATCTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAAT
        130 AACTATTTAGACCAAATGATGCAAT-TTCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAAT

               *   *             
        198 GGAACTTGTTGAATACTTT-A
        194 GGATCTTCTTGAATACTTTAA

                  *            *           *                                 
        218 GGCAACAAAGTTAAAAAAATAACTCGTAAAATTTTGACAAGTTCGAAAGTTCGTACAAAGACAAA
          1 GG-AACGAAGTT-AAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAA

                                 *                    *            *         
        283 GAGAGAAACAATTCTCACGTAGATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAC
         64 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGAC

                     *  *          *                                *        
        348 --A-TATTTTGATCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCACTAAGGAA
        129 AAACTATTTAGACCAAATGATGCAATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAA

                 *  *      *     *
        410 TGGATTTTGTTGAATGCTTTAG
        193 TGGATCTTCTTGAATACTTTAA

                  *            *    *   *         *    * *     *  *    *     
        432 GGAAACAAAGTTAAAAAAAAAACTTGTAGAAGTTTGACCAGTTTGGAAGTTTGTCCAAAAACAAA
          1 GG-AACGAAGTT-AAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAA

              **                                   *               *     *   
        497 GACTGAAACAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTACAAAACGAC
         64 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGAC

              *     *              *      *     *        *      * *   *      
        562 AATCTATTCAGACCAAATGATGCGATTTCTTGAGCAAGGAATGTTTGGAAAACTACTCGAAGGAA
        129 AAACTATTTAGACCAAATGATGCAATTTC-CGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAA

                 ***       *      
        627 TGGATAACCTTGAATGCTTTAA
        193 TGGATCTTCTTGAATACTTTAA

                         *       *                *                *     *   
        649 GGAACGGAAGTTATAAAAGAAGTCGTAAAAGTTTGACATGTTCGAAAGTTCGT-CCAAGAAGAAA
          1 GGAAC-GAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAG-ACAAA

                                                 *               * * *       
        713 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCCAAGACCAAAACTTGTGTACGAAATGAC
         64 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGAC

                 *                *                                    *     
        778 AAACTCTTTAGACCAAATGATGAAATTTCTCGAGCATGGAATGTTCAGGAAAA-TGCTCAAAGGA
        129 AAACTATTTAGACCAAATGATGCAATTTC-CGAGCATGGAATGTTC-GGAAAATTGCTCTAAGGA

                *  *    *          
        842 ATGGGTCGTCTTCAATACTTTAA
        192 ATGGATCTTCTTGAATACTTTAA

                          *      **   *           *        *       *         
        865 GGAA-GTTAAGTTATAAAAGATGTC-CAATAAGTTTGAAAAGTTCGAGAGTTCGTTCATGAA-AC
          1 GGAACG--AAGTTAAAAAAGAACTCGTAA-AAGTTTGACAAGTTCGAAAGTTCGTACA--AAGAC

             *    *  *         * *                 *            *    **      
        927 -GAGAGTGATACAATTCTCTCATAAATAAGTTTTTAATTGAAAGACCAAAACATGATCAG-AAAA
         61 AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG-TTTGCAAAA

                 *                   *                                       
        990 TGACACACTATTTAGACCAAATGATACAATTTTCCGAGCATGGAATGTTCGGAAAATTGCTCTAA
        125 TGACAAACTATTTAGACCAAATGATGCAA-TTTCCGAGCATGGAATGTTCGGAAAATTGCTCTAA

                        *       *   **
       1055 GGAATGGATCTTGTTGAATATTTTTG
        189 GGAATGGATCTTCTTGAATACTTTAA

                              *                     *          *             
       1081 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGCTCGAAAGTTCATACAAAGACAAAG
          1 GGAA-CGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAAG

                                                                   *         
       1146 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGTAAAATGACA
         65 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACA

                 *    *      *                       *    *          * * *   
       1211 AACTAATTAGGCCAAATTATGCAATTTGCCGAGCATGGAATATTCGAAAAATTGCTCGATGCAAT
        130 AACTATTTAGACCAAATGATGCAATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAAT

             *   *               
       1276 GTATCGTCTTGAATACTTTAA
        194 GGATCTTCTTGAATACTTTAA

               *         *         *    
       1297 GGATCTGAAGTTATAAAAGAACTAGTAA
          1 GGAAC-GAAGTTAAAAAAGAACTCGTAA


Statistics
Matches: 919,  Mismatches: 160, Indels: 55
        0.81            0.14        0.05

Matches are distributed among these distances:
 212    1  0.00
 213   69  0.08
 214  117  0.13
 215   27  0.03
 216  614  0.67
 217   88  0.10
 218    1  0.00
 219    2  0.00

ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28


Consensus pattern (214 bp):   
GGAACGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAAGA
GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAA
ACTATTTAGACCAAATGATGCAATTTCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGG
ATCTTCTTGAATACTTTAA
Done.