Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003204.1 Kokia drynarioides strain JFW-HI SEQ_115822, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3598
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38


Found at i:842 original size:5 final size:5

Alignment explanation


    Indices: 832--858  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

        822 GAGGTACACA

                                            
        832 TTCTT TTCTT TTCTT TTCTT TTCTT TT
          1 TTCTT TTCTT TTCTT TTCTT TTCTT TT

        859 TGTTTTGGTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (5 bp):   
TTCTT

Done.