Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003215.1 Kokia drynarioides strain JFW-HI SEQ_115841, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 653

Length: 1089
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:967 original size:24 final size:26

Alignment explanation


    Indices: 940--987  Score: 66
    Period size: 24  Copynumber: 1.9  Consensus size: 26

        930 AGAGAAATGT

                                       
        940 AAATG-TGATATATGA-A-ATTATGAG
          1 AAATGATGA-ATATGAGAGATTATGAG

                                    
        964 AAATGATGAATATGAGAGATTATG
          1 AAATGATGAATATGAGAGATTATG

        988 CACATGTAGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  24   11  0.52
  25    4  0.19
  26    6  0.29

ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31


Consensus pattern (26 bp):   
AAATGATGAATATGAGAGATTATGAG

Done.