Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000323.1 Kokia drynarioides strain JFW-HI SEQ_111087, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 855

Length: 1426
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33


Found at i:1224 original size:6 final size:6

Alignment explanation


    Indices: 1213--1257  Score: 63
    Period size: 6  Copynumber: 7.5  Consensus size: 6

       1203 TGATCAAAAT

                                             *   *  *           
       1213 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
          1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA

       1258 TATGAATTGT


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   35  1.00

ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22


Consensus pattern (6 bp):   
TGAAAG

Done.