Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003235.1 Kokia drynarioides strain JFW-HI SEQ_115880, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11813
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33


Found at i:2424 original size:40 final size:39

Alignment explanation


    Indices: 2379--2461  Score: 130
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       2369 GAAGTCACAA

                                                    
       2379 TGCACTCACATCAGAGTGTCTTTTATTCAAACAATGTTAC
          1 TGCACT-ACATCAGAGTGTCTTTTATTCAAACAATGTTAC

                  ***                              
       2419 TGCACTTGGTCAGAGTGTCTTTTATTCAAACAATGTTAC
          1 TGCACTACATCAGAGTGTCTTTTATTCAAACAATGTTAC

                
       2458 TGCA
          1 TGCA

       2462 GCGGAGGTAT


Statistics
Matches: 40,  Mismatches: 3, Indels: 1
        0.91            0.07        0.02

Matches are distributed among these distances:
  39   34  0.85
  40    6  0.15

ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36


Consensus pattern (39 bp):   
TGCACTACATCAGAGTGTCTTTTATTCAAACAATGTTAC
Done.