Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003237.1 Kokia drynarioides strain JFW-HI SEQ_115885, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7285
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30

Warning! 73 characters in sequence are not A, C, G, or T


Found at i:5844 original size:14 final size:14

Alignment explanation


    Indices: 5826--5859  Score: 52
    Period size: 13  Copynumber: 2.5  Consensus size: 14

       5816 ATATATATAT

                        * 
       5826 ATTTTTTTTTT-TA
          1 ATTTTTTTTTTGGA

                          
       5839 ATTTTTTTTTTGGA
          1 ATTTTTTTTTTGGA

                   
       5853 ATTTTTT
          1 ATTTTTT

       5860 ATCTATTTTT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  13   11  0.58
  14    8  0.42

ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79


Consensus pattern (14 bp):   
ATTTTTTTTTTGGA
Done.