Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003254.1 Kokia drynarioides strain JFW-HI SEQ_115906, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3997
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38


Found at i:511 original size:23 final size:23

Alignment explanation


    Indices: 481--527  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        471 AGTATTAAGT

                                   
        481 ATACTACCATTATGCCTGGAAAA
          1 ATACTACCATTATGCCTGGAAAA

                                   
        504 ATACTACCATTATGCCTGGAAAA
          1 ATACTACCATTATGCCTGGAAAA

             
        527 A
          1 A

        528 GCTTGATCTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26


Consensus pattern (23 bp):   
ATACTACCATTATGCCTGGAAAA
Done.