Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003256.1 Kokia drynarioides strain JFW-HI SEQ_115908, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23332
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:13690 original size:17 final size:16

Alignment explanation


    Indices: 13672--13709  Score: 51
    Period size: 15  Copynumber: 2.4  Consensus size: 16

      13662 TAGAATAGAT

                            
      13672 TTTTAATTAAATAAAA
          1 TTTTAATTAAATAAAA

                      *      
      13688 -TTTAATTAATTAAAAA
          1 TTTTAATTAAAT-AAAA

                  
      13704 TTTTAA
          1 TTTTAA

      13710 AAAAATCTAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 3
        0.83            0.04        0.13

Matches are distributed among these distances:
  15   10  0.53
  16    4  0.21
  17    5  0.26

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (16 bp):   
TTTTAATTAAATAAAA

Done.