Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000326.1 Kokia drynarioides strain JFW-HI SEQ_111095, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12046
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:2849 original size:21 final size:22

Alignment explanation


    Indices: 2823--2864  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       2813 AATCAAAAAG

                                  
       2823 AAAAGAAAAATGAGT-AGAAAC
          1 AAAAGAAAAATGAGTAAGAAAC

                   **            
       2844 AAAAGAATCATGAGTAAGAAA
          1 AAAAGAAAAATGAGTAAGAAA

       2865 ACATATAGTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21   13  0.72
  22    5  0.28

ACGTcount: A:0.64, C:0.05, G:0.19, T:0.12


Consensus pattern (22 bp):   
AAAAGAAAAATGAGTAAGAAAC

Found at i:7510 original size:24 final size:24

Alignment explanation


    Indices: 7470--7518  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       7460 TCCCATTCCA

                                    
       7470 TCTCACCCCCTTATTTCTCC-TTT
          1 TCTCACCCCCTTATTTCTCCATTT

                    *    *           
       7493 TCTCACCTTCCTTTTTTCTCCATTT
          1 TCTCACC-CCCTTATTTCTCCATTT

             
       7518 T
          1 T

       7519 AAGAAATCTC


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  23    7  0.32
  24   11  0.50
  25    4  0.18

ACGTcount: A:0.08, C:0.39, G:0.00, T:0.53


Consensus pattern (24 bp):   
TCTCACCCCCTTATTTCTCCATTT
Done.