Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003275.1 Kokia drynarioides strain JFW-HI SEQ_115935, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5438
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:1222 original size:15 final size:15

Alignment explanation


    Indices: 1190--1241  Score: 50
    Period size: 15  Copynumber: 3.4  Consensus size: 15

       1180 ATAACTTAAA

                   *    ** 
       1190 TTCAATATTTAAAAT
          1 TTCAATACTTAATTT

                      *    
       1205 TTCAATACTTGATTT
          1 TTCAATACTTAATTT

                  *         
       1220 TTCCAACACTTAATTT
          1 TT-CAATACTTAATTT

                  
       1236 TTCAAT
          1 TTCAAT

       1242 TTATCAAGCA


Statistics
Matches: 29,  Mismatches: 7, Indels: 2
        0.76            0.18        0.05

Matches are distributed among these distances:
  15   16  0.55
  16   13  0.45

ACGTcount: A:0.35, C:0.15, G:0.02, T:0.48


Consensus pattern (15 bp):   
TTCAATACTTAATTT
Done.