genome.fa.s3285.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003285.1 Kokia drynarioides strain JFW-HI SEQ_115955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  264210

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5086--5197	57	2.0	57	92	0	188	40	8	26	24	1.84
15710--15748	18	2.1	19	90	4	62	25	15	10	48	1.76
21800--21849	4	12.8	4	85	12	68	76	0	2	22	0.89
21800--21845	22	2.0	23	91	4	76	76	0	2	21	0.90
21800--21854	26	2.1	27	89	3	85	74	1	1	21	1.01
21969--22017	25	2.0	25	88	8	73	61	0	8	30	1.25
26290--26346	17	3.5	17	72	11	57	36	1	1	59	1.18
26284--26380	37	2.6	40	74	20	95	38	1	5	55	1.29
26296--26348	10	5.1	11	72	19	51	39	1	1	56	1.21
28907--28948	21	2.0	20	86	13	59	57	2	0	40	1.12
35115--35140	12	2.2	12	100	0	52	38	38	0	23	1.55
41623--41647	7	3.6	7	100	0	50	76	0	24	0	0.80
50738--50845	52	2.1	52	100	0	216	48	17	13	20	1.81
62676--62739	31	2.0	31	82	11	76	51	1	1	45	1.20
65029--65072	20	2.2	20	83	0	52	25	4	0	70	1.06
78077--78124	23	2.2	23	88	7	73	60	4	25	10	1.47
80334--80408	28	2.7	28	73	6	71	50	2	6	40	1.43
80808--80869	30	2.1	30	88	11	92	37	1	3	58	1.24
82598--82638	15	2.6	16	82	14	50	56	2	0	41	1.13
84097--84141	23	2.0	23	82	8	56	37	22	8	31	1.85
84666--84732	31	2.2	31	81	10	84	41	13	11	32	1.81
87102--87130	14	2.1	14	100	0	58	27	0	20	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87501--87525	13	1.9	13	100	0	50	32	0	4	64	1.12
87494--87553	21	2.8	22	74	20	65	35	0	5	60	1.19
88309--88379	36	1.9	37	85	2	99	61	5	7	25	1.43
89105--89150	21	2.2	21	84	7	58	39	32	8	19	1.82
94413--94461	24	2.1	23	92	3	80	55	4	8	32	1.48
94205--94484	139	2.0	139	87	0	398	51	8	7	33	1.59
106356--106390	12	2.9	12	91	0	52	37	0	2	60	1.12
106467--106520	25	2.2	24	80	3	63	64	11	3	20	1.40
106732--106776	24	2.0	22	83	12	56	24	40	13	22	1.90
108351--108635	30	9.7	29	79	6	315	34	31	2	31	1.71
108351--108635	59	4.8	58	82	6	324	34	31	2	31	1.71
110045--110069	12	2.1	12	100	0	50	32	0	24	44	1.54
117695--117729	6	5.8	6	100	0	70	17	17	31	34	1.93
125170--125212	11	3.8	11	80	17	52	30	2	2	65	1.18
125173--125218	23	2.0	23	91	0	74	32	2	4	60	1.28
125670--125710	21	2.0	21	85	0	55	34	7	2	56	1.40
126165--126254	37	2.5	36	80	8	103	45	1	14	38	1.52
127963--128019	28	2.0	28	93	0	96	26	1	40	31	1.66
128283--128309	12	2.2	12	100	0	54	37	0	7	55	1.28
130006--130416	206	2.0	206	96	0	752	27	26	16	29	1.97
132359--132398	22	1.9	21	85	10	55	40	0	0	60	0.97
141839--141874	9	4.0	9	88	0	54	33	0	44	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142609--142651	18	2.2	20	84	8	54	58	4	4	32	1.39
143011--143047	2	18.5	2	100	0	74	0	48	0	51	1.00
152678--152738	27	2.4	24	77	15	77	62	4	31	1	1.26
153560--153611	18	3.0	18	81	10	56	46	1	0	51	1.12
158127--158346	73	3.0	72	87	4	293	30	10	25	32	1.90
164957--165055	39	2.6	38	79	10	112	45	15	4	35	1.65
164955--165057	20	5.3	20	70	5	70	45	14	3	35	1.63
165010--165058	19	2.7	18	83	3	71	44	20	2	32	1.63
164969--165058	20	4.7	19	72	5	74	44	17	3	34	1.66
165415--165470	20	2.8	20	81	2	60	46	21	3	28	1.68
171431--171503	23	3.2	23	80	3	76	56	19	16	8	1.65
173479--173640	58	2.7	60	83	6	159	26	14	10	48	1.75
173809--173944	31	4.5	31	75	9	102	46	9	16	27	1.78
175438--175479	17	2.4	18	92	4	68	42	0	0	57	0.99
175438--175489	17	3.1	17	86	8	54	42	1	0	55	1.10
176808--176833	1	26.0	1	100	0	52	0	0	0	100	0.00
188726--188797	26	2.8	26	79	8	76	43	1	16	38	1.57
189976--190029	26	2.0	26	82	3	63	42	1	14	40	1.57
189967--190074	48	2.3	47	83	3	137	40	0	15	42	1.53
190021--190074	25	2.1	27	86	6	76	42	0	16	40	1.48
190077--190193	53	2.2	51	79	11	128	41	0	12	44	1.48
190100--190188	27	3.3	27	81	7	110	41	0	14	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189780--190188	136	3.0	136	84	9	593	42	0	14	42	1.48
193163--193222	17	3.7	15	75	18	50	33	1	0	65	1.03
210129--210163	18	1.9	18	88	11	54	71	5	2	20	1.19
210493--210549	19	3.0	20	74	10	64	24	10	3	61	1.44
212401--212544	72	2.0	72	98	0	279	25	9	20	44	1.82
228680--228712	2	16.5	2	100	0	66	51	0	0	48	1.00
238397--238468	30	2.4	30	84	13	87	34	1	9	54	1.42
241175--241329	76	2.0	76	96	0	283	35	25	9	29	1.87
251456--251516	24	2.6	23	76	5	59	59	6	0	34	1.24
251813--251859	22	2.1	22	84	0	58	27	0	2	70	0.99
252950--252987	20	1.9	20	88	0	58	23	5	36	34	1.78
253029--253710	340	2.0	340	98	0	1319	27	19	20	32	1.97
257647--257701	2	27.5	2	100	0	110	49	0	0	50	1.00
264134--264209	2	38.0	2	97	0	143	50	1	0	48	1.09

Tables:   1

The End!