Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003295.1 Kokia drynarioides strain JFW-HI SEQ_115972, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5683
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:2322 original size:16 final size:15

Alignment explanation


    Indices: 2301--2345  Score: 56
    Period size: 16  Copynumber: 2.9  Consensus size: 15

       2291 AATGAGATGA

                            
       2301 AAATAAATTTTTAATT
          1 AAATAAA-TTTTAATT

                           
       2317 AAATAAA-TTTAATT
          1 AAATAAATTTTAATT

              *            
       2331 AACTAAAATTTTAAT
          1 AAAT-AAATTTTAAT

       2346 ACCATAAACC


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  14   10  0.38
  15    3  0.12
  16   13  0.50

ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44


Consensus pattern (15 bp):   
AAATAAATTTTAATT

Found at i:4984 original size:11 final size:11

Alignment explanation


    Indices: 4968--4996  Score: 58
    Period size: 11  Copynumber: 2.6  Consensus size: 11

       4958 CATATAGGTT

                       
       4968 GTAAAAGAGGA
          1 GTAAAAGAGGA

                       
       4979 GTAAAAGAGGA
          1 GTAAAAGAGGA

                   
       4990 GTAAAAG
          1 GTAAAAG

       4997 CAATAGATTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   18  1.00

ACGTcount: A:0.55, C:0.00, G:0.34, T:0.10


Consensus pattern (11 bp):   
GTAAAAGAGGA
Done.