Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003300.1 Kokia drynarioides strain JFW-HI SEQ_115979, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60283

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87--203
62
1.9
59
87
5
171
50
3
3
42
1.36
172--230
29
2.0
30
83
12
77
52
5
3
38
1.40
7803--7835
17
1.9
17
93
0
57
87
9
3
0
0.63
10722--10915
97
2.1
92
89
6
291
36
12
12
37
1.82
11514--11633
58
2.1
58
84
6
154
39
20
5
35
1.74
11549--11695
68
2.1
68
89
1
231
39
17
4
38
1.69
16523--16571
19
2.6
19
78
9
57
51
6
28
14
1.66
16560--16600
16
2.5
17
80
11
50
51
4
21
21
1.67
21713--21834
56
2.2
57
86
7
169
22
26
1
49
1.59
23971--24035
24
2.7
23
75
15
69
46
1
1
50
1.20
24052--24125
30
2.3
31
80
15
80
54
0
0
45
1.00
28755--28798
22
2.0
22
82
8
54
31
13
2
52
1.53
30007--30031
5
5.0
5
100
0
50
20
0
0
80
0.72
36598--36636
17
2.3
17
90
0
60
15
12
25
46
1.81
38217--38272
19
2.9
18
82
15
60
66
5
3
25
1.29
38298--38335
20
1.9
19
89
5
58
55
5
0
39
1.23
38481--38524
13
3.8
11
78
21
54
81
2
2
13
0.88
38481--38530
7
7.0
7
76
19
50
80
4
2
14
0.95
38481--38524
11
3.8
12
82
11
56
81
2
2
13
0.88
40406--40666
50
5.2
50
70
9
152
27
17
18
36
1.93
40388--42399
101
19.8
100
74
7
1167
27
17
17
37
1.93
40418--42397
202
9.7
200
75
7
1329
27
17
17
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40851--41008
51
3.1
51
73
5
149
27
21
17
33
1.95
41352--41469
51
2.3
52
82
2
132
30
16
15
37
1.90
40388--42401
303
6.6
302
76
6
1600
27
17
17
37
1.93
41843--41891
21
2.3
21
85
0
62
24
32
8
34
1.85
41672--42094
223
1.9
223
81
3
512
26
18
17
37
1.93
42383--42619
101
2.3
101
85
4
273
27
18
18
36
1.94
41886--42502
303
2.0
303
79
3
659
28
17
18
35
1.93
41929--42552
50
12.4
51
68
7
238
28
17
17
36
1.93
41929--42552
151
4.1
151
72
4
425
28
17
17
36
1.93
43131--43185
28
2.0
28
88
0
83
49
9
16
25
1.75
43102--43333
88
2.6
86
82
4
293
38
12
19
29
1.88
43248--43463
60
3.5
60
77
10
220
37
12
19
29
1.90
43676--43835
80
2.0
80
100
0
320
31
11
10
47
1.72
47124--47386
26
10.3
26
73
6
198
38
16
23
20
1.92
47137--47383
50
4.9
51
81
4
252
38
17
25
19
1.92
47187--47382
76
2.6
77
73
6
184
38
16
25
19
1.92
47137--47329
100
1.9
100
88
2
289
38
17
24
19
1.93
54389--54494
26
4.2
26
77
13
112
38
16
25
18
1.92
54402--54573
50
3.4
50
86
1
211
37
15
28
18
1.92
54651--54683
15
2.1
16
88
5
50
27
6
21
45
1.75

Tables:   1

The End!