Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003308.1 Kokia drynarioides strain JFW-HI SEQ_115993, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1738
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39


Found at i:643 original size:21 final size:19

Alignment explanation


    Indices: 584--635  Score: 56
    Period size: 17  Copynumber: 2.8  Consensus size: 19

        574 ATAAAAATAA

                          *     
        584 TAAATTTTAATTAAGATA-T
          1 TAAATTTTAA-TAAAATATT

                               
        603 T--ATTTTAATAAAATATT
          1 TAAATTTTAATAAAATATT

                            
        620 TAAATTTTATATAAAA
          1 TAAATTTTA-ATAAAA

        636 ATTATTAATT


Statistics
Matches: 28,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  16    6  0.21
  17    9  0.32
  19    7  0.25
  20    6  0.21

ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48


Consensus pattern (19 bp):   
TAAATTTTAATAAAATATT
Done.